Gene detail

Detailed information of Ppa0G407300 in Paragorgia papillata

Genomic Location: Contig00587:2794765...2808568
NR annotation: XP_028392351.1, CCR4-NOT transcription complex subunit 1-like isoform X2 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Uniprot term	Description
A0JP85	CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis OX=8364 GN=cnot1 PE=2 SV=1
Q6ZQ08	CCR4-NOT transcription complex subunit 1 OS=Mus musculus OX=10090 GN=Cnot1 PE=1 SV=2
A5YKK6	CCR4-NOT transcription complex subunit 1 OS=Homo sapiens OX=9606 GN=CNOT1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07647	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF16417	CNOT1_TTP_bind	CCR4-NOT transcription complex subunit 1 TTP binding domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan
IPR040398	Family	CCR4-NOT transcription complex subunit 1	Interproscan
IPR038535	Homologous_superfamily	CCR4-NOT subunit 1, TTP binding domain superfamily	Interproscan
IPR032193	Domain	CCR4-NOT transcription complex subunit 1, TTP binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13162	CCR4-NOT TRANSCRIPTION COMPLEX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000288	Biological Process	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Interproscan
GO:0000932	Cellular Component	P-body	Interproscan
GO:0017148	Biological Process	negative regulation of translation	Interproscan
GO:0030015	Cellular Component	CCR4-NOT core complex	Interproscan
GO:0060090	Molecular Function	molecular adaptor activity	Interproscan