Gene detail

Detailed information of Ppa0G408230 in Paragorgia papillata

Genomic Location: Contig00588:826110...882772
NR annotation: XP_028403614.1, nipped-B-like protein isoform X2 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G408230

ATGAGCAGGGAGGCACAGAATGTCCCAATAGCTACTTTAGCTGGCATTGCAAACATTACTGACTTTTTGTCTGAGCTACCTCTGCCCAAGAAAGCAAAGAATGAAGTGATCAACTTGTTTCCTAATAGTAAAACCAATCAAGATGCCTGGAAACTTATTCAAAAACATGACATTACACTTGCAACACAGTTATCTCATGTTCTTAGCCAAGTCAACACAGATCATCTGCAATTCAAGGAAGGTGTACAAGATGATATTAATTTTGGTCTCAATAGCAATGATCCAAAACTTCTGACATTATTATTACAACATGTTCCACATCTGTTTCAGTCCACAGTCAACAAGTCCGTGATCATAATACTAGAAATGCAAACTTTTACCGATCTCATGCATGTAGAACAAATATCAAGCAGTAATTGTCATTACAACAATCAGATGTGTTTGCCTGTTGAAGATTATTCACCTTTAAAAACTAGAGCAATGCGAGCTAGTAAACAAGCAACGCCATCTAACACATATCACAACACTGAACTTCCACAAGGTACATGTGCTTTCCTATACTACACAGACTTTACATTACGTTTTCCCCTACAGAATCTCTGTTTTATCGACCAGTTTTTCGAAAAACTGAGGAGCGTCGCATCTCGCACAAAAAAGACAAAATACACCATGAAACGCAGATTGACACCTGAGCCACACGCCAATCAATACGTTAATAATGAATATACAAATGATGTAATTGGTAAACGAAATCTAAACAATTTAAATGAATTTAGTGAAAGCCCTTTGTCAAGTAAAGAAGTTGAGATGGTCCCAGAGCCTAGCTTATTAAATAATGATGATTTTAGCAACAATGCTACGAAATATCCTGAACTTTCTAAGAATGGATATGTTACTCCAAGCGCACAAGAGCCTCAAGAATTAGAAACACATCACGAGAGTGAAATGGAATCATGCCATGTAGCAGACAGCACTACTAATGTAGGAGAACTGATGGTGGACAAAGCAATTATAAATCAGGAGGAGAAACATTCTCATAGTTCCAAGAAAAATAAGAAATCTAAGAAGCATCATAAATTAAAAGATAGTACAAATATTCGTGGAGATAATTTGGAGTCGAATCAAACTTATGTTGAACATAACGTGGATACAACTGAGCAGATTACGGTGATAGATTCCAGTAATAATATACCTCGTGAAGGAACACCATTAGTTCCTAAGATTATTATTGCCAAGACTAAACTTCACAAGGGTTCAGTAGAATCAATCAACTTTACAGTTAAAGAAAATTTAATGAATTCGGAACAAGCACGAGAGAAAAATTCGAAGAGAAGAAGAATATCTTCGGAGGATTCCAGTGGGAAAAGTGAAGGAAAACGAAAGAAAAATGAAAAAGAACTCAATAAAATATCGGATGGTTCTTCACACCATAAGGTTTCTAGACGTTTGTCAGTCTGTCTTGAAGATAACTATCACCAAACATCGTCCTTTAAACGGTTTTCAGAAGCTATGGACAATGTGTTTGACTTTGATGATCAATGTGATATAACTAATTCAATGGGCAATGATTCGCAAGAAGTCGATGCAGAGTTTCTTATTACTCGAACAGCCATTTCCGAGATGTGCACTGAGACGGCAAAACTAAAGTCAATGAAAGTTATATCTAAGGTTAACGAAGATAATTTATCAAGGCTTATTATAATTATGAAGAGACACGTCAAAGATGGAATGAAGTTGCTACTCACTTCTACTCAGGATGATGATGAAGAACAAAAGTTGTGGAAAGGATTATATATGGAACGTATTTTACGATCGTTTGATGCTGCTTTGCTTATTCTTCATATTATGACTGCACATCATATGCCAAAGAAAGTCTACATGGAAGAAGTGATTGAACTCATGGTTTCCTTAATCAGATATCATTTACAACAAAATATATTTCCTGAATATGATCCAATCTATAAAGTTGAACCTGATTCAAAAGAAGGTGCGTCGGTAACACTCAGAACTAAACGAGCAAGATCAGCTAACAAAGGGAAAAAATTTGTTGAATTATACAATAAGATATGCGAGGCTGTGTCTCTTTTGGGAGATCTGATGGACATTGAAAGACTCACAGATACAATTGTTCTGCAGATTTCTAGTCTTGGTACATCACCATTCTTTGTTGAAAATGTTAGTGAGCTGCAACACAGCGCTCTCAAGCTTGTTAGAACAACATTCAGGAAGTACTTAAAGCACAGAGAACTTATTTTGGAAGAGATTTTTGCGTCACTAGCAAGGCTTCCGTCAAGCAAACGAAACCTAAGAAGTTACTGTGTTCATGGTGATGATTGTATTCAGATGGTAACAGCTCTGGTTTTACAACTTATTCAATGTTCTGTGAAAATTGAAAAGAAGAGCGATATTGTCCTTGAAGAAGAAGTTTCTCCTGAAATGGATAGGGAGTTAGAAATTGTTGGCTCGTATGAAAATGCGTTACGTACTGCACAAAATTTCTTGTCTATGTTCTTGAAGAAGTGTAACACTGCGGGAAAGGACGAAGAAGATTACCGGCCCCTGTTTGAGAATTTCTTGCAAGACTTGCTTGTAACCCTGAATAAAAATGACTGGCCAGCTGCTGAAGTACTACTTACTTTGCTTGGTAGACTTCTCGTAATGACGTTCAGTAATCGTTCAAATGATATGGGTCTCCGTGTGGCATCTTTAGACTATCTAGGTGTCGTGGCCGCGCACCTTCGTCGAAATTCGATTTTGGGTCAGGAACAAGAGCGAGAAGACCTTCTAGCAATTATATCTGAGGATGAAGCTGGTTGTGAAATTGAACAAGTTTTACAGAAATATTTATTAAAATACTTTCATGCGCATGGCAAAAATGACCCTGCGTTGTTGTTGGCTCGGCAGTTCTACTTGTGCCAATGGATAAGGGATAATCAAACGGAGTTAGAGAAGGCATATAAAGCTACTGTTCCAAATGGCAATGAAAGTGACTTACCATCTGGCAACCTTGTTGATGGAGATAGTTCTGTACAGTCTTTGGAAATCAAGAAGAGCTTTCTCTTTTCACTTATTGATGAAGATCTTTCAAAGCTAAAGATTCCTAGCAGTAGTCTGGATTATAGCAAAGCCAATTTGGTTGCCAAGTATCTTTTATCCAAGAGGTCATTTCTCAAGAGTTTTGACGTTTACCTCCAACAGATTTTGAGAGTTCTTAACGAGACAGCCGTGGCTGTGAGAACCAAAGCAATGAAAGCTTTGTCAGCAATTGTGGCCGTTGATCCAAGCATATTAGCAAGGGAGGATATGCGGAAGGGAGTTCATGGTAGATTCATGGATCAATCAATAAGTGTCCGCGAAGCAGCCGTAGAACTAGTTGGTCGTTTTATTTTAAATAAACCAGAATTGACACACCAATATTATGAGATGATTATGGAAAGAATATTGGATACTGGTGTGAGTGTACGGAAGAGAGTAATTAAAATTCTGAAAGACATTTGCATCGCACAACCTGATTTTCCAAAGGTCACCGAGATCTGCGTGAAAATGATTCGCAGAATAAATGATGCAGATGGTATAAAGGAACTGGTGACTAAAGTATTTCAGCAAATGTGGTTTGTTCCAGTGGAGAAAGGCAAACCACAACAAGAAGAAATGCTTTTGAAACGTGTAACCAATATTGCTGATGTGGTTACTGCTTTTGGCGAGTCAGGTTGCGAATGGTTACAGCAACTGTTGGAGAATTTGATTAAAAATGATGATGAGTCAGATACGTTGTCTGCTGGAGCTAAACAAGTTCTCGAAGCATGTTCACAAACTGTTGATTGTTTGGTTGATCGATTGTTAACTTTAGAAGAAAGAGCTGTCGCTGAATCAGGTGGTAGAGCTTCAAACAGTCATCGTTTGATTGGTTGTTTGACAACATTGTATCTGATGAGTAAAGTTCAACCTTCAATGGTAGTTAAACATGCAACTACCTTACAACCTTACCTGAGTACTAAATGCAATACTCAAGGTGATCATCTTATTCTTCATTATGTTGCTCGTATTTTGGAACTTGTTATGCCACTTATTGAACACCCTAGTGAAATTTTTCTGGCTAGTATGGAAGAAGATTTGATGAAATTAATTATCAAACAAGGACAAACGGTTGTTCAGAGTTGTATTGCTTGTCTTGCTGCTGTGATCAACAAAGTAACTCATAACCATAAATTGGTAAAAGATTGTTTCCAGAGATATTTTGGTTTCTTGTTGAAAATCAGAAATGAATTAATTCAGAATCCTTCGTCTGCACAACAAAAATCAAACCGTTCTTTGCTATTACGATCATTGTTTACTTTGGGTCTCCTCTGTAAACATTTTGATTTTGAAAACGAACTCAAGACACAAAATAATGAATCTATTTCTCGTCAAGTTTATACCATTTACGTCTACTTCTCAAAGAACGCTGATGAAGAAATTTCCCAAAAGGCCATCGTAGGTTTAGGTTTTCTTTGTATTCGTTATCCAAAGTTTTTACTTGAAGACGGAGCTCGTCAACTATATCAGGATGTGCTGTCACCTGGACATACCTCGGTCAAACTAAAACTCCAGATTTTAAAGAATGTCCAGCTACACTTGGTCGAGGAAGAGAATGTATTACATGTCCGAAACTCTGATTGGAAACAGACAAGTGATAAAGAGAATCTTAAAGATCTTGGTGATGTGCACACTGGAATAACCAGTGAAATTATGCAGCTTTATCTAAAGCGAATGTTGGAAACGTTCTTACATCCTCAGTCAATGGTTAGATTATCAGCATTGACTGTTGTAAACATCATTTTGAGACAAGGCTTGGTCCACCCAGTTCAGTGTGTTTCGTATCTTATCGCAATTGGCACGGATATTGAGCAAGGAGTGCGAACAAAAGCATCGCAAAGATTGGAAGAAATTGACAGTAAATACCCTGGATTTGTTCAGATGAAAGCTCTTCCTGGCGTCAAAATGTCTTTTGAACTACAAAAAATTCTGTATAAGGATGAACCCATTCTCCGTGGTTTCCGTGAAGACCAAACAAGCGTGCTAAGTCATCTGTATCTAATTCTTCGTTCAAGCCGTCAACACAGGCGTTCCTTCTTATTGTCACTACTGAGAATGTTGGATAGTGAAAAGAAGAACAGTTTGGAATTATTATTGTACCTGGTGGATAACATTGCTTACTTTCCATGTTCCACTCTGGCAGAACCTCTTTTTATCATTCACAATATCGATACAAAATTGTCGTTCTCCGGTATAAATGTGCTGCAATCTTTTAAACAGGCACTCCGTCCAGCAACAACCGAGAACGAAACTGTGGATGATGACCTGGAAGACAATGCCGAAACTTTGGTTGCTCGGTTACCTGAAGATCTTAGCTGTCTTGAAAGTTGTTGGAAATCATGGCAGAGTTGTATCCTTTTGCTTTACCTTCGACAACATTTAAAAGAAACGTACAGCTTAAACGACAGTAAATGTCGCAAGTATTCACCTTCTGAACCTAGTAAAGTGTACGATAAAGGAATAACGCGAAAAGCTGATGTTAAATTTCATCCAAGTCAAACCATATCTTGTCTGGAATCATCGTGTACGATGCCTTCTAGAGACGAACTTGTTCGACAATATTTGGAATTCAAAACAATGATTTTAACTCTTGATAAAACTGAAGAAGACAGTGATCATGATTCAAATGGGAGAGAAAGTCCAACAGGCGTAAACGGCGTAGAAAATTGTCAGGATGAGAAAGCTGGTCAAGATGTTAAGAACAAAGAGAAACGTTCTTCGAAATCAAGAAAGACTCCGAGTAAGAAAACACCAGGGAACAGCAAGGGAAAACCCAAAAGGCACCAGATTCCCTTTTTATGTGAGTAG

Transcript

Ppa0G408230

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1QBY1	Nipped-B-like protein B OS=Danio rerio OX=7955 GN=nipblb PE=2 SV=1
Q6KCD5	Nipped-B-like protein OS=Mus musculus OX=10090 GN=Nipbl PE=1 SV=1
Q6KC79	Nipped-B-like protein OS=Homo sapiens OX=9606 GN=NIPBL PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002809 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12830 all species →	Nipped-B_C	Sister chromatid cohesion C-terminus	Repeat	Interproscan
PF12765 all species →	Cohesin_HEAT	HEAT repeat associated with sister chromatid cohesion	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR024986 all species →	Domain	Sister chromatid cohesion C-terminal domain	Interproscan
IPR033031 all species →	Family	Scc2/Nipped-B family	Interproscan
IPR026003 all species →	Repeat	HEAT repeat associated with sister chromatid cohesion protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21704 all species →	NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan
GO:0034087 all species →	Biological Process	establishment of mitotic sister chromatid cohesion	Interproscan
GO:0061780 all species →	Biological Process	obsolete mitotic cohesin loading	Interproscan
GO:0071169 all species →	Biological Process	establishment of protein localization to chromatin	Interproscan
GO:0090694 all species →	Cellular Component	Scc2-Scc4 cohesin loading complex	Interproscan
GO:1990414 all species →	Biological Process	replication-born double-strand break repair via sister chromatid exchange	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06672	SCC2, NIPBL; cohesin loading factor subunit SCC2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.