Gene detail

Detailed information of Ppa0G409580 in Paragorgia papillata

Genomic Location: Contig00588:3359609...3389535
NR annotation: XP_028403721.1, glycine dehydrogenase (decarboxylating), mitochondrial-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G409580

ATGTATAGACACAGTAAAACAATCGCCAGGTTTAATATTATTTCAAACATGCGTGCAAGTTCGACGGCGTTTCTCAGGATAAACACTCGACCTTGTTCGACAGGCAGTTCGAAGATTGAACAAATGCTGCCACAAACAGATCAGTTTCCCGCTAGACACCTTGGCGTAAATGCAGAAGCCGAGCAAGAGATGACTAATTTTTTGGGCCTTGAGAATATCGATGAGCTGGTAAACAAAACGGTGCCGGGAGCAATACGCTTTCTGGGGGAAATGAATATCCGTTCGAGTAAAGGTGAATCTGATCTTTACAATAGGCTGAAATATCTTGCAAATAAAAATGAGATGTGGCGTTCATATATTGGTCTTGGTTATTATAACTGTCTGGTTCCACCACCCATATTACGCGGTGTTTTAGAAAATCCTGGTTGGTATACTCAGTATACACCATACCAACCTGAGATTTCCCAAGGTCGATTAGAGTGCTTGATAAATTTTCAGACAATGGTATGTAATCTTACTGGACTTGATGTTGCTAATGCCTCATTGTTAGATGAGGCTACTGCTGGTGCTGAAGCTGTTGGACTCTGTTATAGGTTTAATAAGAAGAAAAAAATCTTTGTGGATAAGAACCTTCATCCGCAGACCATTGCACTGATTGAGACAAGAGGAAGGACTCTTGGACCAAATGGTGATGGTTTGGAAATAATTGTGACAGAAAAAGAAAATTTTGATTTTTCAAAAAAAGATGTTAGTGGAATAGTAGTCCAGTATCCAGATACACATGGTAGCATATTTGATTATACTGAGCTGACCGAAAAAGCACACCATGCAAAGGCTTTGGTCGCTTGCGCCACAGATCTTCTTGCGTTGACTATACTTCGATCTCCAGGAGAATTTGGAGCCGATATTGCTTTTGGAAACAGCCAGAGATTTGGAGTACCTTTAGGATATGGTGGTCCCCATGCTGGATTCTTTGCAATAAGAAATATTGGAAATCTGCAGCGATTAATGCCTGGACGACTTGTTGGTGTGACAAGAGATAGTTTAGGAAACAGTTGCTATAGACTGGCTCTTCAGACTAGAGAACAACACATACGGAAGGATAAAGCTACAAGTAACATATGTACTGCGCAAGCTTTGCTTGCTAATGTTGCTGCCTTATATGGTATTTACCACGGTCCACGCGGGTTGAAGAAAATTGCAACTAAAGTTCACAATGCCAGTCTTATCCTCGCTGAAGGTATAAAACGAGCTGGACACGAGGTGCAAAACGAATATTTTTTTGACACTCTAAAGGTAAAATGTGGTCGTGGTACAGCCGATGATGTAATGAATAAAGCTGCTGAAAATCAAATCAATCTTCGAAAACTGGATGACAATCATGTCGGCGTTTCTATGGATGAAACAGTGACTGAAAAAGACTTGGACGATTTGTTGTTGGTTTTTGGATCCCAAGACACAGCAGATAGTTTGGCCAGTGATTTTACGGATACTCCCGAAGGCAGTATACTACATAGTGATCATAAGCGCAATAGCAGTTATCTGGAGCATGAAGTGTTTAACACTCATCATTCTGAGACGCAGATAATGCGTTATATGAAACAACTTGAAAACAAAGACTTATCGCTTGTTCACTCGATGATTCCTTTGGGTTCTTGTACGATGAAATTGAATGCAGCATCCGAATTAAAGCCAATTACGTGGCCTGAATTTGCCAACATTCATCCGTTTGTTCCTCTTGAACAAGCTGCAGGATATCTGGAGATGATAAAGGAGCTAGAGCAAGATTTGTGTCAAATAACTGGTTTTGATGCAATTAGTTTTCAACCGAATAGTGGTGCTCAGGGAGAATACGCTGGTCTAATGGCTATCAAAGCTTATCATGAAAGCAGAGGTGAAGGTCATAGAAAGGTTTGCCTTGTTCCTAAATCTGCACATGGCACAAATCCTGCGAGTGCTCAAATGGCGGGATTCAATATTGTTTTTATTGACGTTGGAAAGAAAGGAGAAATTGACCTGGATCATCTTCGGGAACAGGTGGAGAAAAATAAAGATAAACTCGGTGCCATCATGATAACGTATCCTTCAACCAATGGAGTTTTTGACGAGGGTGTTAGAGAACTCTTGGGCATAATTCATGAAAATGGTGGACAAGTCTATCTTGATGGTGCCAATATGAATGCACAGGTTGGTTTGTGTCGACCTGGTGATTACGGTGCTGATGTTTCTCACTTGAATTTACATAAGACATTTTGCATCCCTCACGGTGGCGGAGGGCCTGGAATGGGACCCATAGGAGTGAAGAAGCATTTAATCCCATTCCTGCCATCCCATCCTATAGTTCGTCCAATGGAAGCCAACGACGCCACTTCTCTGGGAACTGTATCTGCTGCTCCATATGGATCTCCAGGAATTTTGCCAATATCTTATGCTTACATTAAATTGATGGGTGCCGACGGACTTACTCATGCTTCCAAGGTTGCCATTCTAAACGCAAACTACATGGCAGCACGACTCAGAGATCATTATTCTGTTCGCTTTGTCGGAAAAAATGGTTACTGTGCTCATGAATTCATTATCGATGTGAAAAGTTTCAAGAGAACTGCAGATATCGAAGCCATTGATATTGCAAAGCGTTTAATGGATTATGGTTTCCACGCGCCTACAATGTCCTGGCCAGTAGCTAGTAGTTTGATGGTTGAGCCAACAGAATGCGAAGATAAAGCTGAACTTGATCGTTTTTGTGATGCCTTAATTCGTATTAGACAAGAGATTGCCGACATTGAACAAGGACGAATGGATGCCGTGGACAATGCCCTAAAGAATGCACCCCACAGTCAACAAGTTTTAACTACTGAAAAATGGAACAAGCCGTACACGAGACAACAAGCTGTTTATCCTGCTCCTTGGCTCAATCAAACAAACAAATTCTGGCCCACAGTTTCTCGCGTGGATGATAAATATGGCGACCAACATCTCATGTGTTCATGTCCACCCATTGAAAGCTACGAAGAATAA

Transcript

Ppa0G409580

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91W43	Glycine dehydrogenase (decarboxylating), mitochondrial OS=Mus musculus OX=10090 GN=Gldc PE=1 SV=1
P23378	Glycine dehydrogenase (decarboxylating), mitochondrial OS=Homo sapiens OX=9606 GN=GLDC PE=1 SV=2
P15505	Glycine dehydrogenase (decarboxylating), mitochondrial OS=Gallus gallus OX=9031 GN=GLDC PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002709 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21478 all species →	GcvP2_C	Glycine dehydrogenase, C-terminal domain	Domain	Interproscan
PF02347 all species →	GDC-P	Glycine cleavage system P-protein	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020581 all species →	Family	Glycine cleavage system P protein	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR003437 all species →	Family	Glycine dehydrogenase (decarboxylating)	Interproscan
IPR049316 all species →	Domain	Glycine dehydrogenase, C-terminal domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR049315 all species →	Domain	Glycine cleavage system P-protein, N-terminal domain	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11773 all species →	GLYCINE DEHYDROGENASE, DECARBOXYLATING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004375 all species →	Molecular Function	glycine dehydrogenase (decarboxylating) activity	Interproscan
GO:0006546 all species →	Biological Process	glycine catabolic process	Interproscan
GO:0006544 all species →	Biological Process	glycine metabolic process	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005960 all species →	Cellular Component	glycine cleavage complex	Interproscan
GO:0016594 all species →	Molecular Function	glycine binding	Interproscan
GO:0019464 all species →	Biological Process	glycine decarboxylation via glycine cleavage system	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00281	GLDC, gcvP; glycine cleavage system P protein (glycine dehydrogenase)	EC:1.4.4.2	Lipoic acid metabolism	ko00785	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.