Gene detail

Detailed information of Ppa0G410680 in Paragorgia papillata

Genomic Location: Contig00589:1047401...1093442
NR annotation: XP_028396427.1, clustered mitochondria protein homolog [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G410680

ATGCCTGCAGTTGTTTCCAACTTAGATGCGGTGTCTGTTAAGGAAGATGTTGAAAAGTCTTCTGGTGAGACAGTGTCTGTAGCTAAGTGTCCTTTTGCACATGGTAAACAGACTGAGGAGATTGCCCATGATATTGAACCACACCAAAATGGTGACAATGATAATGGTTGGTATAGTACAAGTACAGAAAAAGATGAAAAGGTTACACCTGAACCACCACCTTTGTATTTCATTAACTTGAAGCTTTTGATTCCCGGCTGCAATGAACCTTTTTCAATTCAGATATCCTCGCATGAGACTGTTCAGGATATTCGTCAAGTTGTCTTAGACCGACAAGAAAGCTGCTTCAGAACTTGTGTATCACTTTACTTTGATGGGAAACGTCTTGATGACTTTGCTGAGCTACACTCGATAGAAGGATTGAAAGACGACTCTGTTATCAAGATTATTGAAGAGTCTTATTCAGTGCGAGAGGCTCGTATTCATTTGAGAAGGTTACGGGATTTGCTTAGTACATCATTTGAGAGTAATGCTCACTGTGCTGCTGAAAATCTGTCATTATCCTTCTCTGTGGCAGTGTCTGGTGTAGATGTTGAAGATGAAGTTGTTAAAATTAAGCGGGACAATTCAGCCACCATTCCCACTGAAGAATGTACACCACCACCTTATGTCTTGCTAAGTGAAGAACAACCCCTAACATTTGATCCTTTGTTTCCCAAAGATGTCACCCCAAAGATACCTTTGTGTGTGAAGGAATTGTCATTAAGTAGTTGGAACCCTCCCCCTGGTCATCGAAGATTGGCAGGAGACTTGCTCTATATTGACGTTTTAACCTTGGAAGATGATTGCGTGAACGTGACGTCATGTCCTTCTGGTTTCTTTATAAACAGAAGTGAAAATGGTGTTTTCAATCCCCAGCCTCGGGCAGAAAGTTGTAGATCCCATACCTTGGTGGGACTTCTTGCTCAGCTCAGTCCTCTTTTCAAAAAGAACTTTGCATTGTTACAGAAGACCAGCGTAAGACGTCATCCATTGGAAGTAATACCAACACCTTATCAAGTATTTCCCTGGGCAGTTCCCAAGCTGGATCACACTCAGGACAGAATGAGAGCTGAAGATTCTTCGTATGTCAGAATTGGTCACGAGGATCACATGCCTGGGCAGTTAAGAGATTGGAATGAAGAGCTTCAGTCTGCAAAAGAATTGCCAAGAGAATCTTTGCAACAGCGTCTTCTCAGAGATAGAGCCATGTTCAAGATCACAAGTGATTTTGTAATGGCTGCTACTCGAGGAGCTATGTCTGTTGTGGATGGGAATGTTTTATCAATTAATCCTGGAGATGATGAAAAATCTCGAATGTACATTTGGAATAACATTTTCTTCAGTCTTGCCTTTGATAGCAGAGATCACTTCAAAGATGTAGGAGGCGATGAAGCTGCATACACCGCTGCCGGAGCTGATTTACGAGGGGTAGCGGCGTACAACGGAACAGATATTGAGGGTCTATACACGCTGGGAACGGTTGTGGTGGACTATCGTGGCTATCGAGTTATTGCGCAATCAATCATTCCAGGAATTCTTCAACGAGACCAGGAAAACTCCGTGATTTATGGTTCAATTGATGCTGGCAAAACCGTCGCGTCTAGCGAGGAGTTTCTTAAACTGTTACGCAAGGCCGGAAGAATATTGCGACTGCGATCACAGAAGGTGTTGAATGAGAATAACGAAGAAATTGAACTTATATCGTCTGTGGAATGCAAGGGTATCTTAGGCGCAGACGGTCGTCATTATATTTTGGATTTATTCCGAACCTTTCCTTCAGATGTTAACTTTTTAGAAGGTGTTACCCGAAATTCATCTACTGCAACTAATGTTCAAGAAACATTCTCTTATCCTGTTCCTTACAAGACAAAATTGGTGACGTTAAGACCAGAACTGGTCGAATCTTTTATAACATCTCGGTACGTGAATTTCCTCAGATTGGTGGCCAAGAACGTTTCTAAGAGATCCATAGACAGTGAGGAAATTAAGAACACCGAGAAAAAAGATGAAGAAGCATCTAAAACCGCTGACCCAGAAGACTGCAATTCCAATTCAGCCATTTGTAACAATGATGACATTGTTGAAGTAAACAACGAAGAAGAGATGACGATGAAAGAAAGAAAAACTGTTGATGAAAAAGTGTCCACTGAAGCTGTTAGGCAAGCGGCGATAGATGTAGGATCTCTCAGTGAGTCAGAATATGATGTGCGATTTAACCCAGATGCGTATAATGAAGAAGTCAAACAAGCACCTTCAGAGAGTGCTCGTTTGCCAATTGACAAACAACTAATGCAAGATGCTGCTTCATTCTTGTCGCATTCAGTTATAACAAATCTGGTAAAAGATTTTATTAGTTTAGCCCAGTCTCCCATTGATGGTGCATGTTTTACAGAAATCCTTCATAACAGGGGTATAAACATGAGATATCTTGGTAAAATTGCGAGCAGTTTAGCTGAAAAGAAAGACTTGGAACACGTTTATAAAATCTGCGTTTCTGAAATGATTTTGAGGGCGGCGAAGAAATATTTTAAAGTTCATTTGAGACAAGCGTTGCAGCAAAATCTTGCGACGGCTGTCAGCCACTTCCTAAATTGTCTGCTGAGTTCATTTCCTAATCCTGTCCCAACCATACCAAATGACGAAATAACACATAAAAAAAAAAAGAATAAGAAAAACAGAAATAAACAGAATGCGTCAAACGAAGTTATTTGGGCGAAACTTACCCCAAAGCTTCTTTGGTTGTCGTTGATAAATGAAATAAAAAACCACTTTGGTTTTGAACTAAAGCAAAACAATATAGATGATGTTCTAAGTACGTATGGACTGCAGGCCCTGTCCTTACTCAGATCATTTTGTTTAAAAACTGGTGTTCAAGTTTTGCTTTGTGAATACGACTTCAGCTCGAAGAAGAATCCGACGTTCAGCGAAGAACATATAATGAATATCTTTCCTATAATAAAACATACAAACCCCAAGGCACATGACGCAACAGCATTGTTTGAAGCTGCACAGAATAAGCTTCAATCAGGTTGCTTAAGTGAATCTCACAGCATCATGGTGGAAGCCTTGAATCTTTATCATCAAGTTTACGGTCCATTGCATAGCGATATCGCTGTGTGTTACAGACAAATTGCTCGACTTTATTACATGGCCGACGACTCCATTCAGGCTGTTCTACATCAACGTAAGGCCGTGGTGGTCTGTGAACGAGTCTATGGTATTGATCATCCTGACACGATAATGGCTTACCTTCACTTGGCCTTGTACTCTCATAACGCTGGTCTTGTTTCGTCTTCTCTGAAACTGGTGTACAGAGCGCGTTATTTGGCTTTACTTGTCTATGGTGAAGGACATCCTCATATGGCTACGTTTGACAGCAATATTGGACTTATACTTCAAGGACAACGAGAATTCCACTTTTCTGTAAAGTTCTTTGAAAAAGCCGCAGAAGTTCAGCAAAAATATCATGGTCCTGAAAGCATACACACTGCAATGAGTTTTCACCTTTTGGCGAGAGCTAAAGCATGTACTGGAGATTACCGCGCAGCTTTACAAAGCGAGAAGTCAGCGTTCAGTGTTTACCAGAAGAAGTTTGGTAATCTGGACTTCCGCTCTCAAGAGAGTTCAGAATTTCTAAAACAACTTACCAAGCAAGCTGTTCAAATGCAAAGAAAGACGTCCCACAAATTCTCCCCTTCTGGGCGAAAATGTACAAAAGCTTACAAAAATCGTACAAAAGCGTACCATATTTTGAAAAGCACTCTTCTAGTTCCTTGTGTAACCCTAACGCAAATGATTTATTTTTTCTTAGAACGAGAGGACAAGGAGGAGATATCTAAATTAACAAACTTCTTTCGCCACGATGGGATATGTGATTTATTCACGGAGGGCGAAGCCCAAGGTGAATAA

Transcript

Ppa0G410680

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SW19	Clustered mitochondria protein homolog OS=Mus musculus OX=10090 GN=Cluh PE=1 SV=2
Q0IHW8	Clustered mitochondria protein homolog OS=Xenopus tropicalis OX=8364 GN=cluh PE=2 SV=1
O75153	Clustered mitochondria protein homolog OS=Homo sapiens OX=9606 GN=CLUH PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004866 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15044 all species →	CLU_N	Mitochondrial function, CLU-N-term	Family	Interproscan
PF13424 all species →	TPR_12	Tetratricopeptide repeat	Repeat	Interproscan
PF13374 all species →	TPR_10	Tetratricopeptide repeat	Repeat	Interproscan
PF13236 all species →	CLU	Clustered mitochondria	Domain	Interproscan
PF12807 all species →	eIF3_p135	Translation initiation factor eIF3 subunit 135	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR028275 all species →	Domain	Clustered mitochondria protein, N-terminal	Interproscan
IPR025697 all species →	Domain	CLU domain	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR033646 all species →	Domain	CLU central domain	Interproscan
IPR027523 all species →	Family	CLU domain containing protein	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR023231 all species →	Homologous_superfamily	GSKIP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12601 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006996 all species →	Biological Process	organelle organization	Interproscan
GO:0048312 all species →	Biological Process	intracellular distribution of mitochondria	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03255	TIF31, CLU1; protein TIF31	-	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.