Gene detail

Detailed information of Ppa0G410920 in Paragorgia papillata

Genomic Location: Contig00589:1572829...1576176
NR annotation: CAB3995370.1, mediator of RNA polymerase II transcription subunit 21-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q16RX1	Mediator of RNA polymerase II transcription subunit 21 OS=Aedes aegypti OX=7159 GN=MED21 PE=3 SV=1
Q7ZTI5	Mediator of RNA polymerase II transcription subunit 21 OS=Danio rerio OX=7955 GN=med21 PE=2 SV=1
Q2TBU8	Mediator of RNA polymerase II transcription subunit 21 OS=Bos taurus OX=9913 GN=MED21 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007165 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11221 all species →	Med21	Subunit 21 of Mediator complex	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021384 all species →	Family	Mediator complex, subunit Med21	Interproscan
IPR037212 all species →	Homologous_superfamily	Mediator complex, subunit Med7/Med21-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13381 all species →	RNA POLYMERASE II HOLOENZYME COMPONENT SRB7	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15152	MED21, SRB7; mediator of RNA polymerase II transcription subunit 21	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.