Gene detail

Detailed information of Ppa0G411880 in Paragorgia papillata

Genomic Location: Contig00589:2729847...2730953
NR annotation: CAB4002345.1, E3 ubiquitin- ligase RGLG4-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9SAL0	E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis thaliana OX=3702 GN=RGLG4 PE=1 SV=1
Q8LB88	E3 ubiquitin-protein ligase RGLG5 OS=Arabidopsis thaliana OX=3702 GN=RGLG5 PE=1 SV=1
Q9LY87	E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009227 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07002 all species →	Copine	Copine	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052079 all species →	Family	E3 ubiquitin-ligases/Copine domain-containing protein	Interproscan
IPR010734 all species →	Domain	Copine, C-terminal	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR002035 all species →	Domain	von Willebrand factor, type A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45751 all species →	COPINE FAMILY PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16280	RGLG; E3 ubiquitin-protein ligase RGLG	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.