Gene detail

Detailed information of Ppa0G411900 in Paragorgia papillata

Genomic Location: Contig00589:2744604...2746883
NR annotation: XP_046840604.1, mediator of RNA polymerase II transcription subunit 31-like [Xenia sp. Carnegie-2017]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DH26	Mediator of RNA polymerase II transcription subunit 31 OS=Danio rerio OX=7955 GN=med31 PE=2 SV=2
Q4QR03	Mediator of RNA polymerase II transcription subunit 31-A OS=Xenopus laevis OX=8355 GN=med31-a PE=2 SV=2
P91869	Mediator of RNA polymerase II transcription subunit 31 OS=Caenorhabditis elegans OX=6239 GN=mdt-31 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008290 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05669 all species →	Med31	SOH1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008831 all species →	Family	Mediator complex, subunit Med31	Interproscan
IPR038089 all species →	Homologous_superfamily	Mediator of RNA polymerase II, subunit Med31 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13186 all species →	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan
GO:0070847 all species →	Cellular Component	core mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15153	MED31, SOH1; mediator of RNA polymerase II transcription subunit 31	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.