Gene detail

Detailed information of Ppa0G412410 in Paragorgia papillata

Genomic Location: Contig00590:321030...327739
NR annotation: CAH3110976.1, unnamed protein product [Porites lobata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60671	Cell cycle checkpoint protein RAD1 OS=Homo sapiens OX=9606 GN=RAD1 PE=1 SV=1
Q5R7X9	Cell cycle checkpoint protein RAD1 OS=Pongo abelii OX=9601 GN=RAD1 PE=2 SV=1
Q9QWZ1	Cell cycle checkpoint protein RAD1 OS=Mus musculus OX=10090 GN=Rad1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005419 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02144 all species →	Rad1	Repair protein Rad1/Rec1/Rad17	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003011 all species →	Family	Cell cycle checkpoint protein, Rad1	Interproscan
IPR003021 all species →	Family	Rad1/Rec1/Rad17	Interproscan
IPR046938 all species →	Homologous_superfamily	DNA clamp superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10870 all species →	CELL CYCLE CHECKPOINT PROTEIN RAD1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000077 all species →	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0008408 all species →	Molecular Function	3'-5' exonuclease activity	Interproscan
GO:0030896 all species →	Cellular Component	checkpoint clamp complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02830	HRAD1, RAD17; cell cycle checkpoint protein	EC:3.1.11.2	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.