Gene detail

Detailed information of Ppa0G412420 in Paragorgia papillata

Genomic Location: Contig00590:328562...356391
NR annotation: XP_028415171.1, GATOR complex protein DEPDC5-like isoform X1 [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G412420

ATGAATAAAACTTGCAAACTTTGGATCCATCAACCGAACTTTAGTGAAGAGGACCTTGTTGTGAATCCCAAAGACTTTCAGACCGTCGTGAAAGAAGGCGACATTCTTGAAATTTATCAACTATTCGAAGACGGTTCCTCAACATGCAAGCTTCTTTTACAAATAAAGTCTTTACAGACAGACTTCCAACAGAAAGAGACCATAAGTATTAAACATTCCGTGGCGAATAAGTTTAATTTCAGGACATATGCGGATGTTAATGTGCAATTGGTTGAGCCGTTGGATTTTATTTTGGACTTAGTCGAGCTGAAGTTTAAAGACCAGTATTTTGGTCGCAGCGATATGTGGAGGTTTGGGAAAAGTTTGGTTAATTCGTCTGTGTATACGTCGAAGAAATTAAGTTTTTCTGGAGCCAGAGCTGAAGTTTATGAAATGTGGGCCAATGGAGAAAGTGCCAAGAAAGTGACTTGTGGTGTTATTGGTCAAGACACCAGGGTAGTGTTTAGGTCTGGCAGTGCTTCTGTTTTTATCTTCATACAAATGAGCAAAGAGATGTGGGAATTTGATATCAATGGTGATCTTTATTTTGAGAAAACTGTCAATGGTTTTTTCATGGAGCTTTTTACAAAATGGAAAGAAATGAAATGCAACCATACTGTGACCATTGTATATTTTTCAAGAATATTTTATGACAACAATATGCTTAATGACATTCCTCATGTTCTCCGTAACAAGCTTGCCTGTGACTACAAGGGAAGACGTTATGAAGATATTTATCGTGTGATTGTGCATCAAGAGCGGAGAGATGACTGGTCAACAGTTTTGGTAACTCTGAAGAAACACTTCATTTGTTATCGAGAGAGTTTTCAGAAAGAGAACTTTTCTGAGCATCTTTTATCTTCAGCGTCCGAAGGAAATTTTTTGGAAGTATTGAATTTGGGAGCAAGTGTATTTGAAAAAGCGTACATTGATCGCAACTTGGATGGGACTGGACAACAAATGGTTGTCATAACACCCGGTGCAGGAATGTTTGAAGTGGACAGAGAATTAGCAACACTCACGAAACAAAAGATTGTTGATAATGGAATTTCTGCCGACTTGGTTTGTATGGCAGAACAACCTCTTCATTCTGTTCCTCTGTTGAAGTTCCATGGCAAGATGGGTACTAATTCTTTGATTGGAGATGATTTTGGCATTCCTCACTGGATTAATCACAGTTTCTACACCTCTAAATCACAGCAAAATCAGAGAAATGTTTTTATTCCAAGAATTAAAGTTCCTGACTTTATTTTGCAATTCCAAGGTATTCACTCAGAAGAAGTAGAGAACAAGCTGCCCGACTTTGTCGACTACGATGCGTATGACGCTGATGTATTTAAATGCGCTCAGACAAAGCCACGTCCCCAGACAGTGACACCAGGCTGTAATCCCTACACTCCATTCCGGGAAAGCAGGAAGGCTGGCAATACTGATACGGTTGATAAATTCATAGAAAACGAGAATCTCTCGACCACTAGTGAAATTTTAAAGAGCAAAAGTTCTTCAGTCTTGATCAATAAAAGCAGGAAGCATGTATATGTGTCAAGTTATTTACACTGTAATAATCATCACGTCATACAGAATGTCTTATATAAATTATTAAACATTATTAAGAGATTATTAACCGAGAACGAGGTCTGTGATTACGACGAAATTGATGGATTTGATAATTTTTCGTCTTCCAATTCTCCACCGTTTGCCTCGCGTCGAACAGTCGTCGGTAGTGCGGGCACATCGCATGTCTATCAAAACGTTGGTCGTCCCCAAAGAGCCCTAGTTAACCCATTCCGTCCCAACTATCTGCCGTGCAAGATGACGTGTAATAGACATCGCTGGAGGCACACATTTCCAAAAGGGCCTGGAGGAGAGATGCTGCAAGAACATCATCGAAAGATATTGGATAATGATGATAATGATTTGCTGATGTCATTGTTTACCAACCGAGAGACTGAGCTGGGTCATTTTGATGACGACATTGATCAAACAGACAGAGGCCGCCGTAACAGTGACTGTGATTCTTCCAGTGATCAACCGCTGACCTCTCCTCAAAGTCGACCTATCACCGCAGCCTCAGGGTCAATTTCATCCAAGCATACGGCTTGCTTTAACGTCTTGAACCTGGGTTGGGTTCGTAAACTGCACGCGCCGTCCGAGGAGGACTGGACGGCAGCCTTGAAAACTACCGTGGACTGGAAGTCCCTCACGATCCCCGCTTGTCTCCCAGTGACCACTGATTATTCCCCGGATGAACGCCTACTCACCAACCATTACAAAGTTAACAACTACGAGCTCTTTATTGGCGAAGAAGATGACGAGGATATCGAGGATGACAGTGGTGGCGAAGAGGCAGAGATTGTTATGAAGCCTGATAAAATGTTCAAAGAGTTTATCTCACAAAGAATTGCACAGGGATTCCAACTTATAATCTCGAATGTCTCGCCGAGGCGTGTCAGCGTCTTCTCACCGTCGTACCAAGATCGGGGGTTCTCCGGCATTATCCCGAAGGGAAAACCAGACGAGGAGTATTACCTTATGATCGGACGAAACTTCCACAAAATCACTCTTTCCTCCGGCCGGGCATCTTTCACCCGGTTTCGTCCTACCCACTTGTGGTCTGACTGTACGCAGGAGTATCTAAGAATGGACACATCATTTGTTTACGACGATATGACAAATTACAATTGGAATTATTTGGATCAGTATATCTCAAGAGACAGTGGTTGTTCAGGCTTGATTGATTCTCTCAATTACTGGAGAGTTCGTTTGGTACTTCTACCATTGAAAAAACCCAACACTCGCGATGGTCGTTCGATGAGCAGCGACGCCGAAGAAGAAGAAGAAGAAAGTAAAATTCAGTTCACTTATCTTCAGGGAATTCTAAAGTTTCTGGAAACTGTTAATCGAATTCGAAGACCAGCGGCCATGAGGTGGCAGGAGAAGACACCGAAATCTTCCTCGAAGTCAAGAAGGACCAGCACGCCTTGCGCCCCAAGTCAACTGAGCAAAGGGCCAGCGGCTGCACTCCGCACTCACAAGCGGAGTAGAAGTGGAGGTGGTGGTACGAAAGACATGGAGGCCCTCGATGAAGATGTGGCTAGCACAGAGTTTACAAATAAATCACCAGTTACTGAGAAAACCAGTAGACGGAGATCTTCGAGTAGTAGTGATAAGGAAACAAACGAAGATGCCTCAGCAAGCACTACATCGGAAGAAATATTAAAAGCTATGATGGCGAAAGAAACTGGCATCAATTTTCTTCCTGAGATGCGTGGTCTTCCTCCAGGATGTTTTCTAGGAATTGATGCTACGTCTTGGTTTCTACATTATGTTCGACACACGAAGTGTAGATCTGAAGCAGTAGAGCTTGGCCAGAAAATGATAGACGAAGGTTTAATACAACATGCTTCTCGTTCTGAAAAGCAACCGTTTGTGGATGGATTTTATCTTTATTGCATCGTTAAATCATCAGACAGAAACCAAACAAAGAAACCTGATGAATCCGAAAAACTGAAATATCGATTATGGGAAAAGAAACAGTATGATTTATTGTATAAATTCCAAGCCAAGTGGTTTGAAGTTGTCATGAGGAAAAGTGGTTCCGAATCAACTTGCTCAATTTTTGGTTCTTTTAATCAGTGTGAAGAGGAAGAGTTGGTTTCTCAAGCTGAGAAGAAACCGAAAAGGTCTAGTTTTGCTTCTGTAGTGAACAAAAAGATTCCTTCGTACAGAGATGCGGAGATCAACCTTGACCCGCTCAATAGCAGTGATCGTCCTGAGTGGTGTACTGTTCGTTACCATGGTATCTTCTGTCCAGACAATGCCTATGTGGTCAACCTTCGTTGGTTGATTTCAACTGGTTCTGTTCTTAACCAGCTGGTTCAAAGTTGGGCTCGTAAAGTGACCTTATATGATTTTCACTTGGTCCCAGTTCCACGTTCATGCTCGACGGCAAGATATCAAGAGACGATCCGTTTACCATGCCTCATTTTATCGCACTTGATGAAGCCTGCTTTGAAGAACATGTGTCTAAAAAAGACGAGGATGTTTCTCTTTCAAGAAGCTGTCTTAAAGAGATTTGGCTTCATCAAAGATTTCCCATACAATGAAGGAATCTATAGATCTTACCAAACTTCTAGAAAATCCTCCACATATCGCTATATTCATTACACGGGTGCGTTATTCATGACGATAGTGGATCGCGAGGACGGCTGGGGATCTTATGGATACGTGTGGATGATCAACACGATGCTTACGAAGCGTTGGAAGTCTTCAGTGACGTTAGATAGTGAAGCTGCTAAGAAACTTGTGCAGGATCTGCGGGATTTTTGTAAAAATAACAACGGAAAACTAGAAAGGTACTTGGCGTCGCTTGGCGGGAAATATGCGAAAATTGAGGATAGCCCAGAAGACAAAGAGGGCTTTGTATTTGATTGA

Transcript

Ppa0G412420

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75140	GATOR1 complex protein DEPDC5 OS=Homo sapiens OX=9606 GN=DEPDC5 PE=1 SV=2
P61460	GATOR1 complex protein DEPDC5 OS=Mus musculus OX=10090 GN=Depdc5 PE=1 SV=2
Q9W0E3	GATOR complex protein Iml1 OS=Drosophila melanogaster OX=7227 GN=Iml1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003122 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19418 all species →	DEPDC5_CTD	DEPDC5 protein C-terminal region	Family	Interproscan
PF12257 all species →	IML1	Vacuolar membrane-associated protein Iml1	Family	Interproscan
PF00610 all species →	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR045838 all species →	Domain	DEPDC5, C-terminal	Interproscan
IPR048255 all species →	Domain	Vacuolar membrane-associated protein Iml1, N-terminal domain	Interproscan
IPR027244 all species →	Family	Vacuolar membrane-associated protein Iml1	Interproscan
IPR000591 all species →	Domain	DEP domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13179 all species →	DEP DOMAIN CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0005765 all species →	Cellular Component	lysosomal membrane	Interproscan
GO:0010508 all species →	Biological Process	positive regulation of autophagy	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:1904262 all species →	Biological Process	negative regulation of TORC1 signaling	Interproscan
GO:1990130 all species →	Cellular Component	GATOR1 complex	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20404	DEPDC5, SEA1; SEA/GATOR complex protein SEA1/DEPDC5	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.