Gene detail

Detailed information of Ppa0G412710 in Paragorgia papillata

Genomic Location: Contig00590:621005...625640
NR annotation: XP_028396575.1, transcobalamin-1-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20061	Transcobalamin-1 OS=Homo sapiens OX=9606 GN=TCN1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001572 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14478 all species →	DUF4430	Domain of unknown function (DUF4430)	Domain	Interproscan
PF01122 all species →	Cobalamin_bind	Eukaryotic cobalamin-binding protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051588 all species →	Family	Eukaryotic Cobalamin Transport	Interproscan
IPR027954 all species →	Domain	Transcobalamin-like, C-terminal domain	Interproscan
IPR002157 all species →	Family	Cobalamin (vitamin B12)-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10559 all species →	TRANSCOBALAMIN-1/GASTRIC INTRINSIC FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0015889 all species →	Biological Process	cobalamin transport	Interproscan
GO:0031419 all species →	Molecular Function	cobalamin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14615	CBLIF, GIF, IF; gastric intrinsic factor	-	Cobalamin transport and metabolism	ko04980	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.