Gene detail

Detailed information of Ppa0G412770 in Paragorgia papillata

Genomic Location: Contig00590:667997...693642
NR annotation: XP_028396464.1, ras GTPase-activating protein 4-like isoform X2 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G412770

ATGTCCAACTTTACCACACTCGAATTGAAAGTGAGCGAAGCTAAGGGACTTCCAGCGAAAGATTTCCTTGGAACAAGTGATCCATATTGTCTAATTAAAGTCGACAACCATGTTATCGCAAGGACAGCAACAGTGTGGAATTGTTTGGAGCCGTTTTGGGGAGAGGAATATTCTTTTAGTATATCCTGCCATCTTCTTCAAACGTTGTCGATCTACGTCTTCGACGAAGACACTCATTCAGAGGATGATCTTATAGGGAAAGTTGCACTGTCGCGGAAAGATATGTTGAGGATGAACCCATCTGGTGGAGAATGCTGGTATTCATTAACAGAAGTTGATACTGCTTCTGAAGTACACGGCGAGCTTCATTTAAAAATACTGGCATCTGTTTATGGTAAACAGACAAAAATTTCTGTGAAAGTTTTGGAAGCCAGTGTGAAAATTTTACATTTATTTTTACGGAAACCTCCAACGTGTGAAATGAGTACAAAATTTGAATCGCTGCCATGCCCCCAAACGTCGACAATTGTCAAAAAAATTAACGAGGAAGTCGAGGCTCATGACCCTTTCGATGATCGGGTCACCGCAGAACAATTTTGCGAACTTTTCGGTAATTCTGATGATGATAGTGACAGTGTTTTAGTTGATTTAAAATCTCTTGTGCTTGGAGAGCAATTAGACAGATGGTTTCCTCTGGCACCAAAAGAAAACACAAAGATCAAAAATGATTTAAAAAGAAAAGATTTAGGTAAGATTAGATTAAATGTGCAGTTGTTCGAAGAGCACATTCTCCCTTGGGAAAACTATGTTCCTTTGGTCAGCTTACTCACGGAAACAGTCGAGAAACAGCCCTACAGTGACGTCACCACTCTAAGCTTGCTGGAACAAGTAATGACCGCTGACCGCACTGCTATTGGGCGTGCACTAGTAAAGCTTTATCTCAGTCAAGGAAAGATCGTAAAGCTTTTAGACGCGTTGACCCAATCAGAAGTTATTCATACAGAAACACTTAATACTCTTTTTCGTGGAAATTCCTTGGCTACAAAAGCAGTAGATGAATTTATGAAAGTGATTGGAATTCCGTATTTATTAGACACTCTGAAACCAATCATTGATAAGATTTATGATGAGAAGAAATACTGCGAGATAGATCCAAATAAAATTGACAGAAAGTTTTGCAGGAGGAAGAGCATCTTTCAGATGGACGACAACGACGTACAACAAAAGAGCGTTATGTATCTTAAAGGTTATCTTGTCTCAATATTGAACGCCATCTTGGACTCAGTAGACAACTGTCCTCTAGTGTTGACGCAAGTGTTTCGTAATCTCTACGATGCTGCTGCACAGCGGTTCACCGACAGTGAACAGTGTGCAAAGTACTTGGCCATTAGTTCATTCTTGTTCCTTCGATTCTTTGTACCAGCGGTACTCAGTCCAAAATTATTTGGCTTGGCAGAATATCACCCTGATCAAATGGTCTCTCGTACGTTAACCCTCCTCGCAAAGGTCCTTCAAAGCATTGGTAACTTTAGTCCCGGGACGGTCAAAGAACCTTGGATGTTTCCTTTCTCGGAATTCATCGCGGAAAATGCTTTGAAACTAAAAACGTTTATCAACGAGCTCGCTCAATGTCGTCTGCAAACACCACTTTTGATAAAAGAAGGACAGTTAAAAAAATACAAAGTTGGTGGAAAATTAAATAATGTACAATGGAAGAAGTATAACTTCTCTTTATTCAATGATAGTATTCACTACAGCAAGAAATACGACTCACAGACCAGAAAATTTCTTCTGGCTTCGCGAGTCATGGCAGTCGAGAAAGTTGAAGATAGCGTGTTTGGAAAGTCAAACGTTTTTCAAATTATAATGGATAACCCTATAGAAGATGGATGTCGGAACGTTCATTATCTTTTAGCCAAGGATGTGACAGACATGACTCAATGGATCTCAGCAATCCGTAGGATCTTGCCCGAGACTAGTGGTAAGGAGAAGGTGAAGAAGTACCATCGTGGCATCTTTAATGGACAGTTCTGGAACTGCTGTAAGCATCCAGCTAGAACAGATCCCGGATGTTCTCTGACGCATACGATAGCCAGCCTGAATGACTGGCAGGATCCTGTGTTCCCAGAGCAACAAGCACAGATAATTTATAAACAATTCCTGCTGGGCAGGGATAAACTTAAAGACGCTCTAGTGGAAAACATTAAGGAGCAAAATAAACTGACAGATATTGCAATTAGCGATGACGTCATCACTAAGTTATGTAACATTGATTCGAATACGTACACCAGCGTTCGGTTGAACAGTGACAGTGGCTGCGACACGGATATTGACGATGACAAACTTTTTATATTCGATATTCAATTGGATGAAAATTCAAGAACGATCTTAAGTGTTTTGGCCATTGTTAATGGCTTGGAGGAGAAGCATTTGGAACATTCGATAGACAATTGTGAACTGGTTAAAGAAACCGTAGAGTCGGAAGACGAGGTGTTCTTGTCCCTGGCAACGACGTCAAGTTCTTTCTCAATTGATGAAAATGATCTGGAATCCACGGACACCAGTGTCTCACAATGA

Transcript

Ppa0G412770

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z268	RasGAP-activating-like protein 1 OS=Mus musculus OX=10090 GN=Rasal1 PE=1 SV=2
O95294	RasGAP-activating-like protein 1 OS=Homo sapiens OX=9606 GN=RASAL1 PE=1 SV=3
Q6PFQ7	Ras GTPase-activating protein 4 OS=Mus musculus OX=10090 GN=Rasa4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006928 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00616 all species →	RasGAP	GTPase-activator protein for Ras-like GTPase	Family	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00779 all species →	BTK	BTK motif	Motif	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039360 all species →	Family	Ras GTPase-activating protein	Interproscan
IPR001936 all species →	Domain	Ras GTPase-activating domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR001562 all species →	Conserved_site	Zinc finger, Btk motif	Interproscan
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10194 all species →	RAS GTPASE-ACTIVATING PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043087 all species →	Biological Process	regulation of GTPase activity	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G412770.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.