Gene detail

Detailed information of Ppa0G412920 in Paragorgia papillata

Genomic Location: Contig00590:870758...885577
NR annotation: CAB4004346.1, SH3 and PX domain-containing 2A isoform X7 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G412920

ATGCACGAAGAGCAAGTGATCAAAGATATCAAGGTTATCGGCGTTGAAAAACCACAAAAGGGAAAGCTTCAGCAGCATTTCGAATACGTGATTCGTGTAAGCTATGTCGATGGCCATGAACACCTCATCTTTCGAAGATACAGCATGTTGTTTGATTTCCATTCTGTCCTCAAGGAAGTGGTCAAAGATAGATATGGTAGTGTCATTGTGCTTCCTGAATTGCCAGTTTACAGATTTCAACATTTTGGAAGGAAGTTTCTTCGTCTTGGAATGAACAAAGAATTTCATCAAATGACAGATTTTTGCCAGAAAATTATTCTACTTCCAAAATTTATTTCTGAAAAAGATATTATTTTGAAATTTTTTGATCAACTGGGAACAGACATTGCTCATGCGGAATCTTATCAAGAAGAACCCCAAAAAGGAGAATTACCAAAAGATCAGGGTGACATTCCAACATCACCTTCACCTACCGAGGTACTGGGAGGCAGTCAAGACAATGACGACCAGTACAGATCTATTGCAGAGTTTGAAGCTGTTGGGACTGGTGAACTATCTGTTATATGCGGTGAGATTGTTACAGTGATTGAAAAGAACAGCTCAGGTTGGTGGCTCGTTTCAAACACCACAGGTGCAACTGGTTTTACTCCAGCTACATTCCTGGAACCTCTTGAAGAAAAGACAGACAACGAAGAAGAATGGGTTGAAGTGGAAGGTCCACATAATATCTATACATCAGTGAAGGATTACGAAGCACAGTGTCCAGATGAAATCAGTTTTAAGGCGGGAGAAGAACTAGAAGTGACTTCTATGAGTAATTTTGGATGGTGGAAAGTCCGACGTCGCAACGAGGTTGGCTTATGTCCTGCTTCAAGTCTTACCACCAAAGAAACGCTAAATCCAGCAGATTCTAATTACAATGATGACGCTGCAATGAACGAGTTTCGTAAATCCATTCTCCATTTTTCCAAGAAATCTTCAACGCGTGAAACACCGCCAAGAAAGAGTTCTACCAAAAGTAATGATGACAACGAATTTAGCGAACCAGGTCATTTCTACGGAAATTTGCAACGTCCAGCAGAGCCGGAAAGATTTAGTCCTGGAGACGTTGAAAGCTCCGTCAAGTACACAAAAATTATTCCAAAGCATTTAAGACAAAAGGAAACGAGCAGTGAAAATGACAGTATTAAGTATGTCAATGTTCCAGTTATAAAAGATGGCGCCCCACATTACTTTTATACTAATTCCTCGGGTCAGAAATCAGAGGCTATCAATGTACACGTGTTGCGAAAGGACTACCAGCGAAATGATTTCTCATTACAGCAAGGTGAATTAGTGCAAGTGATAGCCGTCATGCCTGATGGCTGCCACTGGAAAGTAGCCACATTGAATCCACCTTTCAGAGATGGACTCGTTCCCTCCGACCTTCTGTGCCCTGAACTACCCAATCACATGGAGGAACCTCTGTCGCCAAGCGAAAGCACAGGATTCGCCGTGGTAGAAGGGAACATGTGGGATAGACCGGAACCTGTGAAGGTCGTACCAAGGTTTACCCAACCACCCTCAGTCAGGAAACCTATCCCTGTGCCTAGGACTGGAGCCAAGTCACCAGTAACAGGGTTTTCAAAAGGTCTGGCAATTGTTGCTCTGGAGGACTTCTTTCCTCCGCAAAGTGATTTGTTATCGTTTAAAAAAGGAGATAGTGGTCGTTTGATTAACGAAGCCGCTAGTGGCTGGTGGTTTATTGAATTAAAAGGTTTCGAAGGGTGGGTGCCAACCGTTTATTGGAGAAAAGTGAAGAGTCAATGGTTTTGTGGTAAAATGTCCAGACAACAATGTGAAGATCGTTTTGCTAAGAGTGGAAAACATTTGGAGTTTATTGTGAGAGAAAGCATACAAAGGGTTGGATCTTATGTATTGTCCATTAAGTTTAACGACAAAGTACATCACTTTCCGATAGAGAAGGCCCCGTCTGGCAAACTAAATATCGGAAAACTGAGCTTTGATCAACTGACTGAAATAGTCACTCACTACACTGTCCATCCATTGTTTTACACAGACCACAGACAACCAGTTTCGTTAGGAAATCCTCTCTCAAGGACATGA

Transcript

Ppa0G412920

Protein

Uniprot

Gene family

Uniprot term	Description
O77774	Neutrophil cytosol factor 1 OS=Bos taurus OX=9913 GN=NCF1 PE=2 SV=1
P29355	Sex muscle abnormal protein 5 OS=Caenorhabditis elegans OX=6239 GN=sem-5 PE=1 SV=1
Q8VCM2	NADPH oxidase organizer 1 OS=Mus musculus OX=10090 GN=Noxo1 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00018	SH3_1	SH3 domain	Domain	Interproscan
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan
PF00787	PX	PX domain	Domain	Interproscan
PF00017	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036028	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR001452	Domain	SH3 domain	Interproscan
IPR001683	Domain	Phox homology	Interproscan
IPR000980	Domain	SH2 domain	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR051228	Family	NADPH Oxidase and PX Domain-Containing	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15706	SH3 MULTIPLE DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24032	SH3PXD2; SH3 and PX domain-containing protein 2	-	Membrane trafficking	ko04131	deepkoala