Gene detail

Detailed information of TcoG001644.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000065l:363725...368659
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG001644.mRNA1

GAAGTCTCATGATCTTGAAAGAGGAAACGCCATTTCAAAACTCGTCCCGTCAACGCGAAGGATCATGGAGTTTAAATGGCCTGATTTTAGGGCGTTTTATTTCAGAAATGAGAATGTCATTTTAAGAGTGCCATTCTGTTTCGTCCTGCAGCTAACAGTATATTTTGACAAGCATGTTAAAGAGTCTAACGAAGAGACGAAAACTTGGTATGAGATCGCTGCTGTACTTTGTGGACTGGTTGGTGCTGTTGGATTACTAGCACACCTCAGCTACCTTCAAAAATTTTTTATTTGGTTGATTGAGCAAGTTGTTATTGTAATAGCCTTTTTTGCAATTGTTACTTATTCTCCAATGGATACCAAAAAAGATACAAATGACTCAAAGGAAAGCTCTAGTCATGAAAATTCATCCCATCTGGGTGGCATTTATGGCTATTCACTTTTGTATACAGAAGTGTTTGTTGCCGTGAGTGTAGCCATTGCACCTCGAAAGTGGACCATAGTCACCAGTGCGAAGCAGACAGTGGGAATGTTTGTTCTCTTTCCAGTTATAATCCAGCTTGTGACTTTACCATTTGTTAAAGCAACGTCAATCTTACGAGAGGTGTGTTTGGCTTACCTTCTGTTTGCTTCAGTAATTCAAATGTACAAAGCCTGTCTTGGCCTTTTGCAGCTCCTTCAAGACTTTCCAGGGATGGTAAAACACTCTTGTAGAGTTGTTATGACCTTTGGATGGCTGGAGTTCTTTGTATTTCACTGGAAAAGAATTAACTTTGGCAGAGTCCTGATGGTGGCATGGCTGATAAAATTTTCTGCCAGATTTCTTTGGTTAATAAAATATGGTGTATTTATTGCCATTGCTGGAAGCTTAGTGGACTGTTTTGATAATCTTCAAGACTTGGCAGGAGCTAGTATAGTTGTTGGAGCAACTGCTAATCTATCCTTAGATTGTGTGAACAAACTTCTAAAAGGAAACCTTGAGAGGCCCATGGAAGAACGTCACCAGGAAGCATGGAATGACAGTATCTCTTTCTTTCTTTTGGCCATACAAGTTGGGCTGATCAACTTACCAAAGCCAGAACGTCTAATGCTTCTTGGTCTCATCATATTTGTGACAATCTCACTGCTGCTGCAGTCTGCTTATGAACTTACAGAACCAGCGCTCATGTCACTAGGGGCAACATACACCGGTGTTTTTAACAGCAAACATCTGCGCACTCTAGCAGTTTGTGCACTGATCCTAGTTCTTCCTGGTTACATGGTTATTGTATTATGTAAACTGTTCAGCTTTGATGCGTGGCTGTTTGTGATCATATCAAGCAACCTTGTGACAATCGTTCAGATCATGGGCTCCCTTGTCATTTATGCGCTCTTCGTGTCCAATGTTCATTCAGAGTCTCAAGTCAAGGATTTGGATGATTATATTTATTACATCAATGCTGGCTCAAAAGTCTTTGAGTTTCTTGTTGCTGTAGTTGTTTTGGGGTATACTGCATGGGCAACCATAACTGGAGAGTGGAATTACATAGGTGCTTTAGTCATTTCAATGCATGCTTACTTCAACGTCTACAAGAGAGCCCAGGAGGGCTGGAACAATTTCCTCTTACGACGCAGTGCAGTGAAAAGACTCAACTCCTTACAGTGGGCCACAGAAGAACAGTTACAGCAGCTCAACGACGTATGCTGCATTTGCTATGAGGAGCTGGATAGTGCCAAAGTAACGAAGTGTAACCATTTCTTCCACAGCCTGTGTCTTAGGAAGTGGCTGTATGTTCAAGACAAGTGCCCCATGTGCCATGCTGATATTCTGCCTCAGGATTGACTATTGCCAGTCCTGCAGCGAATGGCAGCAGTGGGTTAGACAAGCAACAAAAAGTCGACATCATTTTAGGAGAATTTTATTTATAGTAACCAGTGAACCAAACTGGAAAAATGTTAATAGTATAATGTTGGTTTTGTGTTTGTTTTGAAGTTGTATATTACATTTTGGCCATTTAATGTGCATCTCAATTTCTTTAATTCATACCCATTTTTTACATTACAAAATTTGTAAATATGGCATAGCATGGTGGTTATCCCACTCAAACTGTGCCTTTAGCCAATAATTTACCACCTACATGTACAGTGTACAATCACTTTTTACCACTGGACCTCCCTACATACAAGGGTCATGGGCCTTGCTGCCTGCTACTCCTGTTATCCTGCTTGTTACTCACCAGCCTGAAGGCTGTTTAAGATGGTACAACTTTGTTGCATGCAATGCATTTATAACAAACCAGTTTTCATATGTAGTCTGTCAACTTTTACAGTTGGATAAAAATAATTTATTCCCTGCCTAAGTTCATTTTtacagctttgcagtatagatggttttcactcacatgaccttcagtcctgtgggactccaatgacaaaggccatggcgaccatgttggtgtacataacaaaagaagttcattaaaattcttttgtagttgtacaccaatatggccgccgtgatgtaatgtgaaaaccatctaCTTTTTACAAATCAGTAAGTGATTGAATTGCTTGGAAATTAAAATGAAGTTTATCATTGGTGGTACAATGTAAAATAGAAAAAAGTTCCATATGCTGTAAATTGTAGATGTTACATTTGTATGTTTTAATAGTTTATAGTTTAGAGCTACCCATTTATAAGTTTTGCAAAGACGTTATACTATATCATAGAATACATTATTGTACAATGTATGCATGCAGATTATTGAAGGTTATACATTAACTTGATTAAAGTGATGGGCTTGTTAGACTGGttgtttcttttttcagtcattgcttttataatattgaagagcttaatgtgaaaggggcatatatggggggttttggccaaaatatcaggaaaaggcccccaacttgcccattgtttgcatgtgctgcagattttgtgtattttacacggctgtgtttttgtcatctgagggctacatttcttaggatgttgccacagcagatggccagtgaaaaaatatagtggacattttaggtaattagcgttctagcaacaaGCCTTAAGTGAGTGGACAATACTTTAAGTTCTGATACTCAAGATTTTAGATGTTAGTGATAAGGAAGCAATGTAAAGCTTGG

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13705 all species →	TRC8_N	TRC8 N-terminal domain	Domain	Interproscan
PF13639 all species →	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR025754 all species →	Domain	TRC8-like, N-terminal domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR050731 all species →	Family	HRD1 family E3 ubiquitin-protein ligases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22763 all species →	RING ZINC FINGER PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23789	RNF145; E3 ubiquitin-protein ligase RNF145	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.