Gene detail

Detailed information of TcoG002796.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000113l:103690...121439
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG002796.mRNA1

GGAAGGATTGTACGATTGCTTTTGTGCAAGGGTCTGCAAGAACAAAGTTGTGGTGAATTTTAGCGCAAATTTAGCATCTACAGCAAACCTAGAGTTTTAAGATCTAACAGAATAAGGGATGGTTATCCCTCACGACGTACTAGCATATGGCTGGATACCATTTACAGTTGTCTTGGTGTTGACTTTCATTTTCTCATGGTTCTACATTCGCTTTTATCAAGACCATGCCCAGTCGGAGGTGTCGTCCACGCTGACCGCTATTGTGGCTCTTGCCATCACGTTGCTTACTACTGCCCTTGTTCCTGTTGACATTTTCATAGTTTCGTACATGAAAAATGATGACGGAACATGGAAGGATTGGAGTGCCGATGGAGCAGTTGGAAATGACTTTGAAGAGACAACTGTTGCAACCACTTATTATGTGCTTTACGCCTTTGTGGCATTCTTTGCATTTATACTCATGCCGTTCATGTACTTCTACTTTGAAGAAAAAGATGAGGATGTGACGACAAAACAGAGAATGTGTGGTGCCTTGAAGTATACCATTGGGTTTTTGATAGTGGCTATTATACTACTCTTTGTTGGAGCCTTTGCTCCACTGAAAAAACCTCCCAGTAACGTAACCCATTGGGACAAGAAACTTAACTTCATGAAAGATGAGCTTAAAGCTAACCATGGCGAGACAGCTCTGTCACTGCTTCTGGGATTTCTCTCCTTTATTGGCATGATAATAATGATTACCTACACTGCGTATGGTATGACTGCTTTGCCGTTCTCTATGCTGAAAGGATTTAAAAACGCAAAGAAAGAACAGTTGGAAGTCAATCAGAGTCATGAATCAGTGTCTGAACGTGCCCGCATGATCCGAGCCAAGTACACGGATGGTCGCACAATGTCTGGTCATGATAGAAGACTTCTTTCACGCCTTGAAGAAGATGAAAGGCTGCTGGTCAGAAGGGAGAGGCACCTACAGGCTGCCAACCTCAGCTGGCTCAACAAGTGCCTCAAGTGCTGCCGACCATTTGAAGTCATCTTCGGGATTTTCTTTCTGTTGTTTGGCTTACTTATTGTTGTCTCCTTGTTTATCACTTGCTTGGACAAAGCCCTGAATTCACTGGGTTACAAGTTTGGTTATGCTCTTCCCAAGCCTCAACTTCCCAATCCCATCAACATTGTCATGGTTCATGCACAGAAGGTCTTTCCACTGGATTATTGCTTGTTTGTGGGCATTGTCCTGTATTTCCTGTACTGCACCATGTCTGGCATCAGAGCTATTGGTATACGCTGCTGCTGGATAAAACTCTATAAAATACGTTCTCGCAAAACTATGCCACAAGCTCtgctattcctgattctgatggtgatgctgactatgctgTTCTTGAACATTATGTTGTTCACTTTGGCACCACAGTACGTCATGTACGGTAGCCAGCATTATGTGTCGCCGAGCAGTGCCACTGGTGGTAATCATACTGCCCATACCATTAGAAATATAACCCATCACAATGGGACCGGACCTGGAAATGCAACTACCCCTGCCCCCACTTCTTCTCCACATATACAAACCAAAGTCTGTGCTACTGATGCACCAGTAGGTGCATGCATTATGACACGAGCTGCTGTGTTCCTGAACAGATTTTTCTACAAAGTTTGGTTTTTTGGTGCTTGTTATTACTGGGGAACTTGGCTGTTTTTGTTGGTGTACATCATAGGGCTGGGTGTGTCCATTGCGAAAAAACGCAAGTCAGTAGTGGATGAGGAACTGGACTCTAGTGATTACGACTCTGATGAGGAATTGGTTTCTGCTTAAAAGATTTACTTTGTAATGTCAGTACAGGGGGTGTTTttaaagccaaacccccaattaaaaggcggctggactgtccaactcatgcaaatgagctgaatctattgttcttgctcatttgcattagattcgacgaggggctttgccctgttataccacaggttcgcctttaaATAAAACTTAATGATGCTTTTCTAGCTAGCATCTTTCCAGTCGTCCAGAAAGGAGTAGAGAAATGCACTGCGGATAGACAGCAGAAGTCGCGCAGTAGTCATTCCGCAGGGTATTCCTGTTACTCAGTAGTAGTCAAAGTTGTCACCAAACTATTATGGTGGCTTCCATTGCTAGCTTTTATCCTTCTATTCTTTATTACAtagcctgcttagcagcgcatgaaaataatatgggcgcaagaaagaacagggcacgcgagggagacacgcgaggaggaaagtagcacctcattctttcttgtgcctatgtttatttttatgcgcctgctacgcaggcTATTATTACACAATGCTATCAACACTCATTAGCTGTGGATTGAGCAATCAATACATGTAGTAGTCAGCCAAAATTGGAATTGTGATGATAGATTGTCGTCGATTGATCACGTTAGCAGTACAAGTTTCATTCTGGGTCGAAAGTGACAGGGGTGCATTTGTGATACAagtttcagtatcagaatgagaatcttgttaccagtaacagtGCAACTTCTTAGGGTTAATGAAATGTAGCTGGTATCGTGTAAACAAGGCCAGAGCCACAAGAGGAAACTGGATTAAACTTGTACTGTCTGGTATATGACTTACAGTAATCATCTAAATTCCTCCAGAGTCATGAAAGTGGCAGGGTTTGTCCTCAAATGAGATCTATTTATAGATTTTAAGGCCATTAAACCCATTGATAAAAAGTGCATTTTACTTTGTTTAAAACTTGAACATCCATGATATCTATAGTTATTCACGTGGACAGAAACTTTCTTAAGAGTTTCTGATTTGGGGTAGTAAACACGATCTCCCCTTGATTTTTTGCTAGAAAGGGTGCAAACCTTGGGACAATTTTTTAGAATTCAACCTAGTTTGTTGATTCTTATATTTTAAATGCCCAGGTTTATCTTTAAATAACCTGGGCATAAACTTGGTTTGTAACATAACTGGTTTGTTTGTTTGTGCATACTTTTAAGGGTGATTTACAAAAAGTTTTTTCAGTGGCACCTTAAATTAATTTAAATAATTTTGGTTAATTTAATTAACATTTCTTATTTTACATTTGTGTGACGTGAAGTATTATTTATTGCCAGAAAAAAGTTAGTAATTGTGGTAGCCTTTTTGTAGGCCATAGGATGCAATTTTTTTAGATTCAGTACTTTTTATTCATGTACAAGTCTATTGTTTATTTACTAGATACCAGAACATACAGCATGATTCATTAAAGAGTAAAATATAGTTATTGTAATATTACAAGTAGTTCCTTTATGCTGATACCAAAAAGAAGCCAAAAATTAATGTTAAACTTATGGTAAAAACAGTTATAGTTGAGAGGAATGTTTGTTTTAATAGAATTGTAAAGGGTTGAAACAGTTAATCATTGACACAAAAATATAAATAAAAATTTTAACTTGTAAGGCTGTTGCACATTTTTATTCAACCCAGAATTGGAAATTAAGTTACACTTACTGTAATAAAACAAAATTTGCAGAAATAAGTTTGTAAATTATCTTGTTCAAGACAGTTGTACATAAAGCTTTAATTTAGTTTCAAAATGCAAATAATTCTACCTGGTTACACTTTCCACACTGGCACTTGTTGATTATTGTAGGGCATGGCACAAATGAGGTGTGAGTGATTATTTTAGCACAGCTTTTGTGCTGAGCCTTTTAAATAGCATGTTTGTTACATTGCATTCAAAAGATGGGCTGGCCTGCTTGGTGAAATCTTGGTAATTTTTTCATATTTTATAGTTTGTCCTACCTACTGGATGAAATTAGCAATACACATACCTttaaagtgcccataacgattttttttatttttttatctaaatctacacgtcacgtaatgaacatctgcaaaaaaattttttgatttcagatttcagcaaaacatgaatttttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04791 all species →	LMBR1	LMBR1-like membrane protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006876 all species →	Family	LMBR1-like membrane protein	Interproscan
IPR050854 all species →	Family	Lysosomal Cobalamin Transport Escort Protein LMBD1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16130 all species →	LYSOSOMAL COBALAMIN TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0072665 all species →	Biological Process	protein localization to vacuole	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14617	LMBRD1; LMBR1 domain-containing protein 1	-	Cobalamin transport and metabolism	ko04980	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.