Gene detail

Detailed information of TcoG003556.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000145l:96419...117934
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TcoG003556.mRNA1

ATGTTTCCTCAGGAAATGCGCATTGTAGTGCTTGACAGCTTGCCAGGGCAATTCGTTAAGCCAACTGTGTTAAAAAGAGTGGAAAAGATGGTGTCAGCTCTTGTGAAAGTTGACCAGTCGATTGATATCAACCAGTGGTCTTCCTATTCAAACAGGCCTGGCGAGATTCCACAACAGGAAAATACCTATGATTGTGGCATTTACACATGTCTGACCGAACTTTCTGTGGCTGCAAAGGCCAGTGTGCCAGGAAAAAAGGAAGAGGGGGAACGAATGTTAAAGATCCAGCGCTGTATACAGAGCTTGGTGCATGCCACCCACTGCAGGGAGATTAACTGTCAACTTGCAAGTTGTGCCAAGATGAAGCGTGTTGTGGAGCACACAAAAACATGCAAACGAAAAACTGGCGGTGGATGCCGAATTTGTCAGGAGCTTATTCATCTTTGTTGTTATCATGCAAAGCATTGTTTAGAGAGGGAATGCGTAGTACCATTCTGTCGGCACATCAAACTCAAACTCAGACAACAACAAACACAGCAGAGGTTTGCTCAATATCAAACTCTTCGCCGCCGTATGGCCACTATgcagcagcagcagcagcaacaacaacagcagcagcagcaACAACAACAAGGTATGCCTCCCAGGATGCAACAAGGAATGCAGCAGGGCATGCAACAAAGCATGCAACAAGTTCCAAGTGAGATCATAGCACGAGGACCAAGAGCAAGGCTTGAATTTGAAAATGCCTTGAAGACTGGAAAAGTGAAGGTGTACCGTGCTCGAATTATGCTGATTGGACAAGATCAAGCAGGCAAGACGAGTCTGAAGAAGTCTTTGTTAGGTCTGCCATTTGACCCTAACCAGCAGAGTACCGAAGGAATTGAAGTTGATCCAACAAAATTTGAAATTGACATCGACCAAGTCAAGAATTGGCAACGTACTGATGAAAAGTTAGACTTGTCACAATTTGTACTGGATCTTGTAAAGGTGGTGGCTCATAAACTTAaagaagaagtaggtggtgaagaggaaggggaagaggaGgaagaagaagaaggagaagaagaagaagaagCTCAAGATAAACAAATTGAAGAGACAGAGAAAACTGAAGAAGGACAAGGTGTTCCCCTCATAGCCAGCAACAGTAAAAACAGGGAACCGGTCACACCTGAATTGAATATCCACACTGATTTACCTTTAGAAGAATTCACTGATCTTCTTGTCCAGCATTTGGGAGGTTCGAACCTGCAAACTGATGAGACAACAATGGAACAACACATGACTCTAGATCTGTGGGACTTTGCCGGGCAACATCCTTATTACGCTTCCTATCCAGCATTCTTGTCACCACGAGCACTTTATATGCTGGTTTACAATCTCAGCAAAGGATTAAAGGACATTGCTAAGCCCTGTTTTAGACAAGGTATTCATGACATTCGTCTTGGTAACCCAAACGATGAAACAAATTTGGAGAATTTGTTGTCTTGGCTGGTTTCAGTGAGTACTATTTGTTCATCAAACCTTGAAGACGATGGAAACAAAGAGTCAAGAAAATATCTGCCATATCTTCGTCCGCCAATATTCATCGTAGGAACGCATGCAGATGAACCACATCAAGACATAGAGCAGATGGAAAAACAGATTGAGAAAGAAATTTCTGGAAAGGTCTATGTAGGTCATGTGATCCGTCCTTTCTTCTCCATTGATAACAAACAAGGATCATCTGGTGAGGGGATTGGCAAACTCCAGAAACGAATGATTGAAGTGTTAAAGCAAGAACCATACATGGGGGAGGAGGTACCCCTTCGGTGGTTTACATTTGAGAAAATTGTCAACACCTTGGTTGCCGAGGAAAAGAATTATTTGGACCTCAAAGAACTTCAGACCATCATACAGAAAATATTGAAAGCGAGGATGAGGCTGCAGCCATGTTGGATTTCTATCATGACCTTGGCAAGATTGTCAGACATCGCAACACAGTTGTACTAA

Transcript

TcoG003556.mRNA1

Protein

Gene family

Family type	Membership / link
Ubiquitin family	DUB\|ULP\|ULP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02135 all species →	zf-TAZ	TAZ zinc finger	Family	Interproscan
PF02902 all species →	Peptidase_C48	Ulp1 protease family, C-terminal catalytic domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000197 all species →	Domain	Zinc finger, TAZ-type	Interproscan
IPR003653 all species →	Domain	Ulp1 protease family, C-terminal catalytic domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR035898 all species →	Homologous_superfamily	TAZ domain superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR013178 all species →	Family	Histone acetyltransferase Rtt109/CBP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13808 all species →	CBP/P300-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0008234 all species →	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0031490 all species →	Molecular Function	chromatin DNA binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for TcoG003556.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.