Gene detail

Detailed information of TcoG004664.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000188l:346951...348219
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08265 all species →	YL1_C	YL1 nuclear protein C-terminal domain	Domain	Interproscan
PF05764 all species →	YL1	YL1 nuclear protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008895 all species →	Family	Vps72/YL1 family	Interproscan
IPR013272 all species →	Domain	Vps72/YL1, C-terminal	Interproscan
IPR046757 all species →	Domain	Vps72/YL1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13275 all species →	YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043486 all species →	Biological Process	obsolete histone exchange	Interproscan
GO:0045815 all species →	Biological Process	transcription initiation-coupled chromatin remodeling	Interproscan
GO:0140849 all species →	Molecular Function	ATP-dependent H2AZ histone chaperone activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11664	VPS72, TCFL1, YL1; vacuolar protein sorting-associated protein 72	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.