Gene detail

Detailed information of TcoG006032.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000258l:507678...513829
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG006032.mRNA1

TTCATTTGAAAAGTCCTTGCTCCACAAAGTCTGTTATTCATCAAAGTCCAGATTTTCTTGCTTTGTTGCAAATAATGTATATCCATCTAAACATTGTCAAGGAAATCATACAGACTAAAATACAATCTTGTTTGTTAGAGTAGCTTTTTAAATAATTGTAATAATAATTTAAGAATTTATTTGCACTTCTTGCATGAACATGATCAAACTAAGGTGCATTACACACACCTTAAAAGGTAATACAAGGAAAGTGTAATAAAAATAGATCACTGTTGTCTCCCTTTTCTCAGggcgccacgaagctcgcagaattggctgagaaaacaataaacaacagaatggttcctagacctaaaacaatagagcttcgtgacacccagggccaatgaaattagaggttctaaacagcttcATGTCTCCCTTTTCTCCTGGGTAGGAGTATAAGGGTAGGAgtgtaatgattcatatttcttgcgattcgattcaatttggattatgaatattgtgatttgatcatgcaaatagttttagacttatctgttgtaccatctttagccggaaaaccataatattacagctgatctaaaagacgcaagtggattcacgatcgcttggtcattcgtcaccatgtttgagaatgtggCAATGAGCATGTTGCACATGGTTTGACTTATTTGGAAATTTTCAAGGGgtggtagaagggcagcatttttaccaggcaacacaaaatggtgcaagacctgcaaatgcctttgcttgtcaatcaaaaatgcagattttaaaaggttctaattctgatttcacaatataataactcattgagggcaccctgaaaaaggtttgcaaaaatgaagccaaaattgaaacgtggaagcaaagaatcatgaatcgaacagaatggtcataatcgcaattaaTCAAGAATCTGATTAATAAATCGAAAATAAGTCAAGTTTAAAATCGAAAAAAAGTCAATTTAAGTATTATAATTTGTAATTAAATAACTTATTACTAATTATTAGTAAAAAGTTAAGTATTGTAATTAGTTATTTTTAATAATTGTTCATGAAAAGCCCCTTTGGGGAGGACACGATAAAGTATGTATGTATGTGGGAGATATTTTTGTTTGTGACTTATATTGTGCATGCATTTTCTTTCAATAGTTTTCGATATATTTTAGATGTGTTACTGTGCACAATATATTTTTCCTTCTGCAAAAGAATTCCAGTAACTTTTTCATAATAAATTGCCCAACCCTCATCTCAAAAACAAAATGATCCGTCCTTATGTAATGTTGCAGTTCGTACATTTAAATTACTCATCATCAAGATTATTGTTTTAACCCATCAATCACATGCAATCTGTTGTTATCAAGTTACCATAATTTGTATTAATCAGTAGACCCCACAAGCCCTAAAGACTCAAAGCTGTCAGTAAAGCATAATAAGGACTTGTAATATTAGTTTTCAAGCAAACTTATCAATGATCTCCCGGACTCTGAATGAGGTCATGTTCCAGTTTGCTGGATATGGTGCTTCAGAAGTAGATATTAATCAAATGTTTGCATGTCCGTATCCACTCCAATCAAAGGAAATGATTGAAATGATTTTGGTGTTCAACAGCATATCCACTCAGACCGAAAAAAGCACAGTACAGTACTACAATGTTTAAAGATAAAACGATAACAGGTTTTGCTAATTTATATACGGTTTATGCTGATTCCACCCTGCATGTATACAGTACGAGATTTGTAGTTTTATTTTGTTTTTTGTATGTCTGAATCGTCTGAATGACTTTGAAGTGTCTCAAGTGGCGGGTACTTTGAAGTTTAACGCAGACGATCAAGTTACTGTGACCAGACAGCAATACAAATGACACACGAAGAACGGCGGCATGTTGCAACACTAATGACTAAAAATAAATAAATTTCAACTAAATTTAGTTAAATTTATTAGTTCAAGCATCTGACGAGTATTTGTGCGCAATGCGGCATGAACGACGTTTCTGTAAAATTATGCGACTTAATCGCGATCGATCACAAAACTTCTGCAACACCACGACATAAACGGTTACAAAGAAAAATTATTTCACTTACATTAGACCTTTCAAGCTTAAGGTCATTTGTAAAACTTGCAGCCTAAAATTATTTTTGCTTGCATAACTTTTGTACTATAAGCTTATTATAAAGCTTAACACATGTCAAAGAGAGAAAAGCTTCGTTGGTGTTAAAAAGGATACAAATTCCTGCAACTGAGGTGAAAAGACAAGCAAATATAGCGATGTTCCTTCTTTTCATCTGCTTGAGCTGCTTTTGCCTCATGGAAAACTGTTTGTTGAGGATTTCAATGCGCTTTTTCTCGGCTTCGGTAAATTCGCTCGAGTTGTCCGCCATTTTGAAATATTCGTTTTTCCGCTGACCAGCTGCTCGCGGTCGGAGGTCAATTGACGTCATTTGCCTCCAATAGAAACTTCAAAGCGAGGCGATAGCGTGACTTTAACCCGGTGATGATGCAATCAATGACGTCAATCAAATTCAACCAATAAGAGTAAGTGTTCTATTAGCGCTTCAAGAACGTTCGTGCGTTGTAATTGGTTTATATTTAGTCTCGGATGACACCTAATGTCATGACATCATCGCTCCCAAAATAGTTTGCGCTAGTATAAAAGCTCAGTGACTCAGCAACTTTCTTCTCAATTGATCACGAGGAAATCGTTCGGTAGTTTTTGTGTTGTTCCAGGAGAGGTTTGTTTCTCTCTGCTATAGCTGTTTTAACACAAGTGGAACTAAGATAGTTCTATAATTATTCCAAGGAGACCAAAGGAAGCGAAGAATAGGCTTTCTGATCAAGGAACATTTCTTCTAATTATTGTGAATCTGAAATCGTCGCCGTCTTTGAAAGCACCAAGTTCACAAACATGGCAGTGGGCAAGAAGTACTTCGACTCTGCGAACCTTTTGCATCTCGCAATGGCCTTTTCAATATTTAGACCAGAGCTTCAAGGATTCGTGGGACAAAACACAACTCCACCGATGCCTGCATACCCTCCATATCCTCACAATTACACTGGAGTGCCCTTCGCGCCGAGCAGCACAAGCAACTTCAACTTTCAGCTTGCACCGAAAGAAACAGATGCAGATTACAACAACCCCCTGAGCGAGTTTCTCGACTGGCATACAGCAGGCCAGAACCGATTCAATGGAGATGGAGTAGCGATGCTTTTCAACGGAGTTGAAAGTCACGCTCCTCGAGAACCGCGTACTTCTTTCAGTACTGAATTGGAGAGCGGTTATAGCTCGGATGGGGGCCGCTCGCCCTCGGTCCTTTCCTCTGTTGCTGGATCACCGCCTCACGATCGTGAATCGAGCATGGGAAATTTCCAAGCACCCGATGAACATTTCAACGACTTTGGTGCGGCTGGGTACACTCCGGCCGAGGAAGATTTCCTGAAATCCATTGGTGACTTCGAGCTAGACGACTACATTGATCTCGACCGATTCGACACTATTTATGACGGTCCACCGCAAAAGAAATCACATTTATCAGAAGAGCAACCTTTGTACCCAAATATCAAGACTGAGCCAGTGAGCCCTGTTGACACTCGTGAAGTCAAATTTCCTAACTCTCCTCTAGATGCCTATGTGCCGTCGGATTTCATCCGCAAGAACCCCTTCGACGAAATTTCTGTTGAAGAGCCTTTCAATTTTGATGGCTTGGACCAGCTCAATTCGTACTCGACAGCCGACTCCATTGATTTCATTCCGCCAGATGAGGAATTGACGGACACTGGATTTGATTTTGCAACTTTTGCTGATAATTTGAATTTTGCAAATGATTTGCCCCTCGATATTTTCGATCCACGACCACCGATGGCGCAATCTGCAGTTGAAAACAAACATGACACATTGCTCCCGCTCGGACAAGAACTCTTGCCAGTCTTTTCTGAGGCAGCAGCGACAAGAAACGACAGCGGTGGCTCATTTACAGAATCTTCATTATCTCAAGCCATTGGTGGAAACTGGGAAAGTGCATCTTTGCCATTATTGTCAACTTCAGCCATCAAGCAGGAGAAAACAGATTTCCCTGGACCATCAACCAGCACATCTAGCAGATTTACATGTGCAAAAGCTCCAAGGGATTACAAAGATGCAAGGCCAAAGATTGCTTCCTCTGCTGCGGCATCCCATTTTGCATCTGAAGATGAAATAATTGACATGACCATTAGTGAATTTAACACCTTCTTAGAAACACTGGGTGAAGCAGAGGCACAAAAGGCTAGAGACATTCGTAGGAGAGGAAAGAATAAGGTTGCTGCTCGGTTGTGTCGCAAGAGAAAAATAGAACTGGTTGGTGATATAGAGGAAGACATCAACAGCCTCAAACAGAAGAAGGAAGAGATCCTTAATGAAAGGAAAAAACTGCAGGCTGAAAATGCCTTCTATAAAAATAAAATCAGTGAACTGCAGGATCACCTTTTTAAGAGCTTGCGAGATGAGAGTGGGCGACCTCTTTCACCGAAAGAGTATTCCCTATTCCAAGGAGCTAATGGTAGCATATACGTAGGGAAGAATATTGACTCTGAATCAAGAAAAAAGCATTCCCGTGGTGCTGAGTAGAAACTGTAAACAGACATAACTCAAGGGTAGTTTATGTGAATTCACAGAGGTTGTGATTAGCTCATAGAGAGATCCCAATTCACAGCAGAATTTGATGACCCAAAATGTTCTGAAGAGACCCTCAAAATACATACTCATTGTAAACGTTTTATGTCCATCATTTGCAGAAATATAATGTATTTATGTCGGAGAAAAATGAAGAATTGGTCAGAGAATGTTCCAGTCAGTAGCATTAAAAACATCTTTTTGTACTGCACTTTTTTCAGTCAAAAATATATATACCTGCCAGTATATTGTATTTATTTGTAGCTGGTAGAGATTTTTTATTCAAATTTTTGTAAAAAAAAAAGGTTCATAGCTCTCAGTTCTGTAGTCCATACTTTATAGTTTGCATTACCAGTATTTCTACTTTCATGGCAATGTTTTGAGGGCTGCTAAATCTCTTTGGATGATGAGTAATTAATGTTGTCCCTATCCAAACTGTACATGAATCCCTTAAGTCCACGAATTTTCATGTACACAAGAATATGAAAATCAAGTGCCAAACTTTTTGCTAGGACTAAGTTTTTTTGAACTTCAAGTTTTTCAGGCCAGGCATATTGTCTCAAACAGAGCAAGTTGCACATTTTTGGGTTACATTTAATACATACACATTTTCATTGTAAATAGACTGTAAATAGTTGGTTCCTTTTAAAGGATATTAAATATTCCTAAAACACTGTACATGTCATAATTTTATAATAGATAACAGGTTGAATTTATGTAGCTACTTAAGTAAAAGATTCCTTTTAACTAGAGAAAAAAAGAAGGAAAAAAATATAAAAAAGTTACATGTAATA

Protein

Gene family

Family type	Membership / link
Transcription factor family	TF_bZIP · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03131 all species →	bZIP_Maf	bZIP Maf transcription factor	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004826 all species →	Domain	Basic leucine zipper domain, Maf-type	Interproscan
IPR046347 all species →	Homologous_superfamily	Basic-leucine zipper domain superfamily	Interproscan
IPR004827 all species →	Domain	Basic-leucine zipper domain	Interproscan
IPR008917 all species →	Homologous_superfamily	Transcription factor, Skn-1-like, DNA-binding domain superfamily	Interproscan
IPR047167 all species →	Family	Nuclear Factor Erythroid-derived 2-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24411 all species →	NUCLEAR FACTOR ERYTHROID 2-RELATED FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for TcoG006032.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.