Gene detail

Detailed information of TcoG008322.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000366l:165751...189880
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TcoG008322.mRNA1

ATGTCTTGTATTCACTATAAGTTCCGAAGTGCTCTAGAATATGACACAATTACATTTGACGGACTTTCTATCTCGCTGGCCGATCTTAAACACTCCATCGTCACACAAAAGAAGTTTGGGAAAAACACAGATTTCGATTTGGAAGTCACAAATGCACAAACCAAGGAAGAGTACAAAGATGAGATGACAATGATACCAAAAAATTCCTCAGTGGTAGTGCGGAGAATTCCAATTGGAACAAAAAGCAAAGCTCAGCTGGCAGCGGAAAGAGCATCTCCGTTTTCAAGTGGAGAGCAGAAAACAAGTGCTTTCCAAGATTACCAAGTTCCAAAAACCCACAAGTTGAGCAAGGTGACAGACTTGGCTAATGCAGATGCATCAGAAGAGGACAAGCTCAAGGCTATGATGAAACAGTCTGGAGAAGACTGGGATCCATCACAATACGTGAGAGGGCGTCGACCTTATGCCCCTGGTGTGCCTGTACCTCAGAGCTATGTTTGTTACAGGTGTGGTAAACCAGGACACTTCATAAGGAACTGTCCAACCAATGGGGACACTAGGTTTGATGTTCCAAAGGCAAAACGTACAACTGGAATTCCTCGCACTTTTCTGGGCACAACAGAGGGTACGGCATCTCCTCCAACCAGAGTATCACCCTCTTTGCCAGATGTCGATTCGAAAACCAAATTAAAAGAAAAAGAAGTTTCTAACAAGAAAGTTCCTTCAGAACTTAGATGTCCAATGTGCAACAGTTTGTTAACAGATGCAGTACTTATTCCTTGCTGTGGAACAAGCTACTGTGATGATTGTATTAGAAATTATCTTTTGGAAAATGAGCAGGAATGTCCATCTTGTCGAACAGAGAATGTTTCACCTGATTCCTTGGTTATCAACAAACAGCTTAGACTGGCTGTAAATAACTTCAAAAATCCCCGACCAGCCAGCCCTTTTGTCGCCGCTGTGGTCAAGAGTACAACAGCTGCAACAAACAATACTGATGTGAAATCCCAACCACCTACAAAGGTTGTTGCTGACAGTGCAAGTGATAAGCCTGCCACAGAAAGTAAACCAGCTGTAGAAAATAAAGTGATAAAAGAAGTAAATGATGCAGATAGAAAAACTAAGGAAAGTTCGCCAAAGCCTGTGCAGGCAGTGAAACCAGTACCAAGTGAGCCTCATCCCATCAGGGTCCATCACCGTGACACATTATCCCAACAAGGTTTTGGTTTGAAGCAGGGTGGGGCACCATTTGACCCTCGCAGAAGACAAGGTGAATTCCTCCCAAGGGGAGCCCCTCGGGTACCCGAATTACGCCATGGACTGTCTGAACCCATCATACCCCACGGACTCCCACCAGAACATGTCCCTCGTGTACCGGCTGTCATGCCCCGTATGCCAGGCCCGTCTCACCCAGGGCCTCGCATGAACGTACCCGGTTATGTTCCTGGTATGCGTGCAGCACTACCTGCAGCAGCCATTCCTCACATACCACCTATCCCTACCCTGGTAAGGCCGCCTCTACCCCACCACCCAGCGTTTGGAGCGCCATTGTTCGACCCACTCCACCCTGTTGATGTAGCCAGATCTCTTACTCCGCCCATGTCTGAACGGGAATTCTACAAAATGCAAAAGAAACTGAAGACAAGTAGGAACAAAAAGACACGAGAACATGAACATCCTCCTACGAGTTTCTCTCGTGAATCTCGTCCAAGAAAGGAACCTAAAAAAGAACCAAAAAAAGAACCAAAGAAGGATGTCGGCGATTTCGACTTTGACGATGAACTCTTCGAATACCGAAAACTTCAGAAAAGCCGCCAACGACAGCATTCTCCTCCTTTCACTCCGtcacgctctccatcacggtcacgctcacgctcacgttcattttcacgttcaaggtcgctatcgcgttcGTCCCAAAGCCCTGCGCGGTCGCCTACTCCCGAGGGCTGGGACGAGTCACGCTCTCCCTCGCCTGCTTCGTCGCGTGATCTAACTGCGACTGCAACTGCGACTGCGTCCGCAGAGGAAAAGAAAAGAAAGCACAAGAAAAGGAAGAAGGAACAAAAAGGAAAAGAGCGCAAGAAACAGAAGACTTCACACAGTAAAGAAGGTGGGTTTGCCACAGAGCAGAAGGAGGAGCCTGTTGCTGATAAAGGGGAAGCGAAAACGTCGGAGAAGAAAAAGCACAAACGGCGTgacaaggacaaagcaaacgataaagaaacagaggaggagagggataagaggaaggatgttgggaaagagaaggataagaaggaaatgaaagtggaagagaaagaaaaagggaagaaaaaggagaagaagaaagggagtgacaaggaaacagggaaagaaaaagatgagaagaagagtaaagagagaaagaagaagaagaaggacaaggacaaAAAGGATGATTCTTCCACCGGAAAGAAGCGAAAGAGTAAGAAAAAGCACAAGAAGCACAAACGACATAAGAAGGAAAAATCCAAGGACGGGAAGGGTGACGAAGAAAAGGAGACGAGTGATGGCAAGGTAAAGGACAGTGAAATGGGAGTGGGGTCCTCTGGAGATGGCAACCAAGAGGAGAAAACCAGCACAGATGATGAAAAGGAAGAACATGAGACGCAGGATAGAGAGGACAGTGAACAGCAACAAGGTGAGAGTGACGAGGAAGAGAGCGAAAGTGAAGAGAGGATGAGTGAGGAAGAAACGAAAGGAGATAAAATGGATGAGGAAGAAACAAATGGAAGTGAAGAAAGGCAACAAGAAAGAATGAGTGAGGAAGAAGAGAAGGGAGGAAAAATGGATATGCAAGGTAAGGAAGAAACAAATGAAAGTGAAGATGAAAAACTACGAGCTAGTGGAAGCGATGAAGAGAATGAAGTAAACCAAAACGACGTTGATGAGGAAAAGCTGTTAGGCAATGAAAGTGATGAGCATATGGAGCCGGAAACGAAACTGCACGGAAGCGGAAACGGAGAAAACGGAAGTGACGTTGAAATAAAAAACGGAAGTAACGTTAAGGGAGATGAAGGTGGGAATGAAGAGAAACTTCTTGGAAGTCAAAGTGATGAAAAGAGTGATATTGTAAATGATGAAATACTGGGAAATGAGACGGAAAGAGAAGGAAATGAAGAAAAGAACATAAAAAGGGAAAATAAGAAAGCGAATGAAAGTCAGGGAGAAGAATCGAGGAACAGAAATGATCAGGAGAAACTCCAAGTCAATGTAGATATCAAAACGACAGAATAG

Transcript

TcoG008322.mRNA1

TTCGGATTTGTCTCGTGTTTTGTCTTGTCGCGTTCAGTTTTCCGGTCTCAGCAACGCAACGGGTTTTAGTTTAGTGTTTTTTCCATAGTTTTTCGGGTCTTTCTAGTGTGTTAAGGTTTTCATTGTTTGTTTAATTTCCCTACTAGGTTTTGTACTAGAATTAGACGGTTTTGCGCCTAATCCAAGCGAACAAAAATGTCTCTTTGACTCGTTCACGGTCGATGCAGACGAAAGAAATTTTTGACCATTCGGGTCTAAGTTTTCGTTTTCACTTGAAATTCATTTGCAACCCCGATGTCTTGTATTCACTATAAGTTCCGAAGTGCTCTAGAATATGACACAATTACATTTGACGGACTTTCTATCTCGCTGGCCGATCTTAAACACTCCATCGTCACACAAAAGAAGTTTGGGAAAAACACAGATTTCGATTTGGAAGTCACAAATGCACAAACCAAGGAAGAGTACAAAGATGAGATGACAATGATACCAAAAAATTCCTCAGTGGTAGTGCGGAGAATTCCAATTGGAACAAAAAGCAAAGCTCAGCTGGCAGCGGAAAGAGCATCTCCGTTTTCAAGTGGAGAGCAGAAAACAAGTGCTTTCCAAGATTACCAAGTTCCAAAAACCCACAAGTTGAGCAAGGTGACAGACTTGGCTAATGCAGATGCATCAGAAGAGGACAAGCTCAAGGCTATGATGAAACAGTCTGGAGAAGACTGGGATCCATCACAATACGTGAGAGGGCGTCGACCTTATGCCCCTGGTGTGCCTGTACCTCAGAGCTATGTTTGTTACAGGTGTGGTAAACCAGGACACTTCATAAGGAACTGTCCAACCAATGGGGACACTAGGTTTGATGTTCCAAAGGCAAAACGTACAACTGGAATTCCTCGCACTTTTCTGGGCACAACAGAGGGTACGGCATCTCCTCCAACCAGAGTATCACCCTCTTTGCCAGATGTCGATTCGAAAACCAAATTAAAAGAAAAAGAAGTTTCTAACAAGAAAGTTCCTTCAGAACTTAGATGTCCAATGTGCAACAGTTTGTTAACAGATGCAGTACTTATTCCTTGCTGTGGAACAAGCTACTGTGATGATTGTATTAGAAATTATCTTTTGGAAAATGAGCAGGAATGTCCATCTTGTCGAACAGAGAATGTTTCACCTGATTCCTTGGTTATCAACAAACAGCTTAGACTGGCTGTAAATAACTTCAAAAATCCCCGACCAGCCAGCCCTTTTGTCGCCGCTGTGGTCAAGAGTACAACAGCTGCAACAAACAATACTGATGTGAAATCCCAACCACCTACAAAGGTTGTTGCTGACAGTGCAAGTGATAAGCCTGCCACAGAAAGTAAACCAGCTGTAGAAAATAAAGTGATAAAAGAAGTAAATGATGCAGATAGAAAAACTAAGGAAAGTTCGCCAAAGCCTGTGCAGGCAGTGAAACCAGTACCAAGTGAGCCTCATCCCATCAGGGTCCATCACCGTGACACATTATCCCAACAAGGTTTTGGTTTGAAGCAGGGTGGGGCACCATTTGACCCTCGCAGAAGACAAGGTGAATTCCTCCCAAGGGGAGCCCCTCGGGTACCCGAATTACGCCATGGACTGTCTGAACCCATCATACCCCACGGACTCCCACCAGAACATGTCCCTCGTGTACCGGCTGTCATGCCCCGTATGCCAGGCCCGTCTCACCCAGGGCCTCGCATGAACGTACCCGGTTATGTTCCTGGTATGCGTGCAGCACTACCTGCAGCAGCCATTCCTCACATACCACCTATCCCTACCCTGGTAAGGCCGCCTCTACCCCACCACCCAGCGTTTGGAGCGCCATTGTTCGACCCACTCCACCCTGTTGATGTAGCCAGATCTCTTACTCCGCCCATGTCTGAACGGGAATTCTACAAAATGCAAAAGAAACTGAAGACAAGTAGGAACAAAAAGACACGAGAACATGAACATCCTCCTACGAGTTTCTCTCGTGAATCTCGTCCAAGAAAGGAACCTAAAAAAGAACCAAAAAAAGAACCAAAGAAGGATGTCGGCGATTTCGACTTTGACGATGAACTCTTCGAATACCGAAAACTTCAGAAAAGCCGCCAACGACAGCATTCTCCTCCTTTCACTCCGtcacgctctccatcacggtcacgctcacgctcacgttcattttcacgttcaaggtcgctatcgcgttcGTCCCAAAGCCCTGCGCGGTCGCCTACTCCCGAGGGCTGGGACGAGTCACGCTCTCCCTCGCCTGCTTCGTCGCGTGATCTAACTGCGACTGCAACTGCGACTGCGTCCGCAGAGGAAAAGAAAAGAAAGCACAAGAAAAGGAAGAAGGAACAAAAAGGAAAAGAGCGCAAGAAACAGAAGACTTCACACAGTAAAGAAGGTGGGTTTGCCACAGAGCAGAAGGAGGAGCCTGTTGCTGATAAAGGGGAAGCGAAAACGTCGGAGAAGAAAAAGCACAAACGGCGTgacaaggacaaagcaaacgataaagaaacagaggaggagagggataagaggaaggatgttgggaaagagaaggataagaaggaaatgaaagtggaagagaaagaaaaagggaagaaaaaggagaagaagaaagggagtgacaaggaaacagggaaagaaaaagatgagaagaagagtaaagagagaaagaagaagaagaaggacaaggacaaAAAGGATGATTCTTCCACCGGAAAGAAGCGAAAGAGTAAGAAAAAGCACAAGAAGCACAAACGACATAAGAAGGAAAAATCCAAGGACGGGAAGGGTGACGAAGAAAAGGAGACGAGTGATGGCAAGGTAAAGGACAGTGAAATGGGAGTGGGGTCCTCTGGAGATGGCAACCAAGAGGAGAAAACCAGCACAGATGATGAAAAGGAAGAACATGAGACGCAGGATAGAGAGGACAGTGAACAGCAACAAGGTGAGAGTGACGAGGAAGAGAGCGAAAGTGAAGAGAGGATGAGTGAGGAAGAAACGAAAGGAGATAAAATGGATGAGGAAGAAACAAATGGAAGTGAAGAAAGGCAACAAGAAAGAATGAGTGAGGAAGAAGAGAAGGGAGGAAAAATGGATATGCAAGGTAAGGAAGAAACAAATGAAAGTGAAGATGAAAAACTACGAGCTAGTGGAAGCGATGAAGAGAATGAAGTAAACCAAAACGACGTTGATGAGGAAAAGCTGTTAGGCAATGAAAGTGATGAGCATATGGAGCCGGAAACGAAACTGCACGGAAGCGGAAACGGAGAAAACGGAAGTGACGTTGAAATAAAAAACGGAAGTAACGTTAAGGGAGATGAAGGTGGGAATGAAGAGAAACTTCTTGGAAGTCAAAGTGATGAAAAGAGTGATATTGTAAATGATGAAATACTGGGAAATGAGACGGAAAGAGAAGGAAATGAAGAAAAGAACATAAAAAGGGAAAATAAGAAAGCGAATGAAAGTCAGGGAGAAGAATCGAGGAACAGAAATGATCAGGAGAAACTCCAAGTCAATGTAGATATCAAAACGACAGAATAGAACGGGAAGAAGAAAGAAGATGAACAAGCATAAACGGAATTCATACAACAAACCACTACGAGAATGGAAATAACAAAAGCAAACATGACGAGCAGGAAGAGGGAAGAGAAAGTAGAAAGAGGGAAGTAAAAAATGGGAAAAAATGAAATGAAAAAATGGAAAGAAGTTAAGACGAAAAAGTGATTGAAAGAAGACAATAGAAGATGAATTGGCCACAGAGCTTTTGGTCCCTTTTAGCCTTGATATCAACTTTCAAATTGACATTGCATTTCTTGTGTGTTTCTGCATCTATTATCACTCATATTTTCGTTACGCTCATACTGAAATGATTTTGTATTTATGTGAGTGCAAATAGCATATTGATCGTTGTCAAGGCTGAAAGGTTAATATGGAATTATCGATATATAACTTTAGTCAATATGTTTGCTACTAGTACAAAGTTGTGCTGGGATACTTACTATTTCAAGAAAACCCCGGTTGGAAAATCCAAACTTCGCGTTCGAATAGAAACCAGTCGTTTCATACTTGTGCATATCGCATTTTCATATCTCATTAATGGTCGAGTCATTTACCATAACCTGCAAAAGAGGTGGTTAAGTGGTACGACGAGTCAGTGTAGTGGTATGACGAGTCTAGTTTCGCCCACGCGCGACTCTCGCATTTTCTCTTTTACCACCGCTTGAAGGggcagtgtcgcggggatttggtgtcatttataaacaagaaaaggattttgtataaataaaacccgaaaaataatggtccagttttgtaaaaaattagcacccAACTGCAACAAAACGAACAGATgttctcacattttattttccaaaatgggctagaacagaccatgattacttcctctttcaataattggttgacttctttgtctcggtgttagtattattttgtaaataagtaaagggattgtagcattgttttcaccaaaaaaCGTCAAAATCCCCTCTGACAGGTTAGTTTTTTTAAAGAATCGTGATGTTGCGTCATTGGGCAAGTAGCACACTGACATTTGGAGTCGAAAATATATTCGGAAGCTGTTACTGGTAAACTTAAATTTCCAACTGGGtgtttttggtaataaatagtgggcaccgcaagattgcaatttgtatttcttcttaaaagaaataaaacgtttaaatcagagctaagaaagaaacctgtggcatcaaaatgcattgtaaccagatatgtaatgtgtaaaaaatagaagagaaaagaatgcgggtaatgttcatatgttgttgaaatctaaactttgtatgtatttgtcaatatcgtttgaataagtaatcaaataaaattgtatttattttgctgtaaaaaagagactggttttagtctgtagctgctgtaaatcctctgttaagccctccctctc

Protein

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UFD\|DWNN · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13696 all species →	zf-CCHC_2	Zinc knuckle	Domain	Interproscan
PF13920 all species →	zf-C3HC4_3	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF08783 all species →	DWNN	DWNN domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR014891 all species →	Domain	DWNN domain	Interproscan
IPR025829 all species →	Domain	Zinc knuckle CX2CX3GHX4C	Interproscan
IPR001878 all species →	Domain	Zinc finger, CCHC-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR036875 all species →	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15439 all species →	RETINOBLASTOMA-BINDING PROTEIN 6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10624	RBBP6; E3 ubiquitin-protein ligase RBBP6	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.