Gene detail

Detailed information of TcoG009140.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000410l:545870...570039
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG009140.mRNA1

ATGCCAAAAATGGacatttctgtgatgaaacaaaGTGGAGGTTATGCTCGCTCATCATTTATAACAACACAACCATTTCCTGCCATTCCGTCTGCAGATGAACCACCAGTGTATCATGTACCAACTCCAAGAGAAAGACGAGTACCAGAAAAGAAAGCAGCTGAAGTTGTTGTGGCCATGTACGACTTTGTTGGAACAGAACAAGGCGATTTGTCTTTTACTGAGGGAGACTATTTAACAGTCCTTGATAAACATTCATGTCATTGGTGGATAGCCGAGAATTTAAGAGGGGAACAGGGTTACATTCCAAGTAATTATGTAAGAAGGCAAGGCTTGGAAAGTGAAAGGCATGGAGATCATGTTCGCCATTATCACATCAAGAAAGAAAATGAACTGTTGTACATATCAGACAGACATAGATATCCAACAGTCCCTGAACTTATCAATTACCATCAGCACAACAGTGGAGGTGGAGGTTATGCTCGCTCATCATTTATAACAACACAACCATTTCCTGCCATTCCGTCTGCAGATGAACCACCAGTGTATAATGTACTAACTCCAAGAGAAAGACGAGTACCAGAAAAGAAAGCAGCTGAAGTTGTTGTGGCCATGTACGACTTTGTTGGAACAGAACAAGGCGATTTGTCTTTTACTGAGGGAGACTATTTAACAGTCCTTGATAAACATTCAGGTCATTGGTGGATAGCCGAGAATTTAAGAGGGGAACAGGGTTACATTCCAAGTAATTATGTAAGAAGGCAAGGCTTGGAAAGTGAAAGGCATGAACTGTTGTACATATCAGACAGACATAGATATCCAACAGTCCCTGAACTTATCAATTACCATCAGCACAACAGTGGAGGTGGAGGTTATGCTCGCTCATCATTTATAACAACACAACCATTTCCTGCCATTCCGTCTGCAGATGAACCACCAGTGTATAATGTACTAACTCCAAGAGAAAGACGAGTACCAGAAAAGAAAGCAGCTGAAGTTGTTGTGGCCATGTACGACTTTGTTGGAACAGAACAAGGCGATTTGTCTTTTACTGAGGGAGACTATTTAACAGTCCTTGATAAACATTCAGGTCATTGGTGGATAGCCGAGAATTTAAGAGGGGAACAGGGTTACATTCCAAGTAATCATGTAAGAAGGCAAGGCTTGGAAAGTGAAAGGCATGAACTGTTGTACATATCAGACAGACATAGATATCCAACAGTCCCTGAACTTATCAATTACCATCAGCACAACAGTGGAGGTGGAGGTTATGCTCGCTCATCATTTATAACAACACAACCATTTCCTGCCATTCCGTCTGCAGATGAACCACCAGTGTATAATGTACTAACTCCAAGAGAAAGACGAGTACCAGAAAAGAAAGCAGCTGAAGTTGTTGTGGCCATGTACGACTTTGTTGGAACAGAACAAGGCGATTTGTCTTTTACTGAGGGAGACTATTTAACAGTCCTTGATAAACATTCAGGTCATTGGTGGATAGCCGAGAATTTAAGAGGGGAACAGGGTTACATTCCAAGTAATCATGTAAGAAGGCAAGGCTTGGAAAGTGAAAGGCATGGAGATCATGTTCGCCATTATCACATCAAGAAAGAAAATGAACTGTTGTACATATCAGACAGACATAGATATCCAACAGTCCCTGAACTTATCAATTACCATCAGCACAACAGTGGAGGTATATAAAACTCTATTTCAGTGTCACATCCTAAATAAATCCTCTAACTTTTTTCGTTCGTTTCCTTGTCTTTACTGACTCAGTATTCTGACtcagtcagtcagtccttccatccgtcagtcacacagtcagtcagtgagtcagtcagtcactccaaaagacagacagacagacaatcagtcaAACAGGAAATCAAAGAGTTAACTTTTTGGTAAATTTTAGTGCTGAGAATCACTTATAAAATTTCTAAATGAGCACAATTTCAGGGGTCAAActactagcaaaactagtaaggtctctagctctttttttgcagtcgttttccctttgatg

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00018 all species →	SH3_1	SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR046982 all species →	Family	Bridging integrator 3/RVS161-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47174 all species →	BRIDGING INTEGRATOR 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006897 all species →	Biological Process	endocytosis	Interproscan
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0030479 all species →	Cellular Component	actin cortical patch	Interproscan
GO:0051666 all species →	Biological Process	actin cortical patch localization	Interproscan
GO:0097320 all species →	Biological Process	plasma membrane tubulation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for TcoG009140.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.