Gene detail

Detailed information of TcoG010110.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000472l:90164...128975
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TcoG010110.mRNA1

ATGGCTCAAAGTAAAAGCTTCTTCGATCACGTGAAGAAGGAATTGGAATGTTCTGTCTGTCAGGAGCAGTTTAGTAAAATCAAGGAACCAAAACTACTGAAATGTCTCCACACTTTCTGCAAGACCTGTCTAGAATCTTGGTTACGGCAGCAGCGTGAAGGAGAGTTGAGTTGCCCAACATGTCGTCAGATCACCGAGTGTCCTAACAACAACATCAACAGCCTTCTATCCAATCTGTTTTACAAGCAGATGGTGGAAATTGTGGACGCTTACAGCGGACAAGGGCAAGAGGGGGATTCTCCGCTTTGTGGAAACTGTGAGGAAAAGAAAACACTAAAGTTTTATTGTTTTGATTGCAACGGCTTCTTGTGCGAAGACTGCGCTGGCGGCGCCCATAAGGTATGTAAGATTTTTAGGGGACACCATGTTAAGGAAATCGGCAACTTTGAGACAAGCGATATGCAAGATTATGCTAGGAAGGCAAACATTTGTAAGAAACACAAGGATGAGTTGAGATTTTACTGCGAACAATGCAAAATTTGCATATGTCGTGACTGTGCCATATTGGAGCACCGAGACGATCGAACACACAACCTAATTTCCTTTGAACAAGGGCTTGTAAAAAAGAAATCGGACATTACAAACAAAATGCAAGACATTGAAGCAATTGGCTGTCGTTTGAAGGATCAAAAGGAATCTCTAGAGAAGCGAAGAGTACGAGTGCTTAATAGCATTGATCAAACGACTGACGAAGTTCATCGAGTCGCTGAGCACTGGATAAGTTTAATTCGCCAACATGAATCAACCATGACCAAAGAGTTATCCAAGCAGAAAGAAACTTTTCAAGCTGCATTTTCAGCCCAAATGACCGACTTAAACGACAAACTGATAGAAATAGACGGCAGCTTAGAATTTGGTAAAGATGTTCTTGAACGAAAGAATCTACCAGAGATTTTAAACGTCGAAGAAATACTGGAGCAAAGGTTTCAGGATTTGTTGTCATTACGGCATGCAATTCAGGACAAGCTGAATTACTCGGGGGTGAATTTCATTCCAAGCAATACGTCGTCCATAGACAACGCGCTGGGAAAGTTAGTTATCACCAACACCGAGCCTTCGTTGTCGATTGCACAAGGCATGGGACTGACGGAGGGTTTAGAAGGCGAAGATTGCACTTTCACGATCATTACAAAGGATTCCCAGGGTCAGATAACTTACAGTGAAATTGACAAGGTCTTTGTTGAGATCCAATCACAGACTGGGAGAGTCACTAAACCCAGCATAACAAGCTCAAAAGATGGCCGCTATGAAGTAAAGTACCGACCTGAGACTGCAGGAATATTCAGTGTGTCCATAACAGTAGAAGGCGAAGCTATCACTGGCAGTCCTTTCCAGCTAAGTGTGAAAGAAAAAATGTCGAGAGCGCAAGGGAGAAAGAAAATAAAGATCTTTTGTGAACATCCCATCAGCAAGATGCTAATGGAGCATCAATTAGAAATTCATAAGGATGATACACTGAATGATGCAGTGGCCATTGCTCATAAGCTCTTCCACTTGGATAAGATCCGTCCTGTAGAACAGTGCAGAATTGTGAAGTATGATGAGTACTATGACTATATTGAGAGGTCGTTTGATGGAGAAGAGTATGATCCAATGGGAAAAGTACTTTGTGGAGTCAAACAGTCATACATGTTTGACCTTCTCCTTGAAACAAAAATGTCACATGAAAGATTTTTGCCCTACAAACCTGGTGGAACAACAGTCAAAGTTCATGTTGTAGATCTTGAAAATGAGCGAGTGGCTCATCCTGTCAATGTGCGGCCGCTACTCAGTTGGACTGTGAAGGACCTTTACACTATTATTCATCAGAAATTTGGCCTTCCCTTAGAAACTATGAGAGTTGTGTTTGAAGGAGCATACAGTGAACTTAAGCTGCTGGACAGCCCCAATAAAGTATTAAAAGAACTTGGATTCTTCAAAtctaacaagGTGTTTGTGGAAGCATCAACTTTGGAGGAGGATCTTGTTTTTAAACACTCGCGGCTGTTTGAAGTGTTGGATGTTTATCAACACACCATTCAGCTCTGTGTTATGCTACCTGATCCTGCCAAAAAACCATCAGAGCTTACAAGTAGATATATATGCGAGGCTGCTGTTGATTCTGACAAGAATGAAAAAGGAAGAGAAAAACTCTATAATATTGACAAGAGAATCACCCTTGGAAAGCTGAAAGAAATTCTGCAGGATGATGTGGATTGCTCTCCTGAATTTTTTAGGGTTTACAGAGTATACTCAAATAACCAAGAAATTGAGTATAGCAAGTTATCTGATCCCTTAACAAGCTTCAGCGATGAGTCGAAGGTGCGAGTCAAATACAGCCGTGCTCTCAAGAAAGGGGAGCACCAACTGAAAATATTTCTGCTGAATCCCTCGGAAAAGGAGCCTTTTAAATACCTTTGTGACTGGATAGTCAGCGATGGCATGACAGTGAAAACTTGCAAAGAACTCCTGCAACCAGAGATCTGTCAAAGATGTGGCATTGATGCCCCAGTTGAAAATTTAAGAATAAGAAGAAAAAACTGGAAAAATCCTGGAAGAGTTTACGTTGATAGCCAGGTGTTTGAGGAGAACATACAAGTGTATGCAAACTTTGAAATGTTTTTGGAAATACTAGAAGGTCCTGAGAGAATGACCTCAGTAGACCAGCTGTCACTCTATGTACGGAGGTGGCACCCTTCAACGTTAACTCTTGACCTTCCAAAAGAAGTCGTTCTGAAGGAGAGTCTAGTTGAACACTTGAAAGAAGAGATGAATAAACTCAGTGGCATTCCAGTGGAGAATTTAGAGCTTTGCAAGGGTCGTGGACAGTTCCCCTGTGATGCGTCAATCCTTGAGATTCATGGAAATGATTTCGGCTGGTCAGCTGAGGTGATATCTCTTGGGACAAGTCCTTTATTGATTAACGATGATGGAGCTGTAGTATATTACAGAGATAAAACAGAACAACTTATGgaaataacagaagaaagaaaaaagaaaatcatgaaaaaataa

Transcript

TcoG010110.mRNA1

Protein

Gene family

Family type	Membership / link
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19718 all species →	USP47_C	Ubiquitin carboxyl-terminal hydrolase 47 C-terminal	Domain	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR047153 all species →	Family	TRIM45/56/19	Interproscan
IPR045578 all species →	Domain	Ubiquitin carboxyl-terminal hydrolase 47, C-terminal	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25462 all species →	BONUS, ISOFORM C-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for TcoG010110.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.