Gene detail

Detailed information of TcoG011862.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000581l:286495...293373
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG011862.mRNA1

TTCGAATCGTCAGTTTGTTTTATGGTTTTGTCTTTTGTAGCCTTTTGTGAAAATATCTTGGAATGAAAAAAGACTGAAAATAGCTATAGTTGTAGTCTTGGCCACCTACTTGTGTTTTCGGAATATTTAAGCACAAAAAGTTCTTGTCAGACTTTCGTCCACAGTACTTTTATCTTTGTACAGTACTTTGTCAAAGTGTTTGTACAGAACTTAACAAGAAAGATTATGGTTGTGATGACCTCGTTCCCTCCTCCTACGGAGGGATTGTGCCATGTTCAAGAAAAGACTGAGGCTTTTGTTCAAGATAAAACATATGGAGTGGGAACTTTGTACATAGCAACAGAGAGGTTGTCTTGGTGCGACTCAACTGGCCAAGGTTTTTCATTAGAGTATCCGTCAATATCTTTACATGCAATTTGCAGAGACACTTCGCAGTTTCCTCATGAGTGCATCTACTGCATGATGGAATCACCACTAGATGATAATGAGAATGATGGAGCCAGTGATGATAGCAATGAAAAAGTTGGTGAGATCAGATTTGTGCCCGAGGACAAGTCAAAATTGGATGTCATGTTTAAAGCAATGTCAGATTGTCAGATTCTTCACCCTGATCCCCAGGAAGAGGAAGATGAAGACTTTTTTTGCGATGCAGATGAAGAAGAACTTTCTGAGCGAGGACAGGCAACACTCGAACAGTTAGAAGGCATGATACAAATGCCAAGTCAGCAGGAATTTGTGCAGATGACATCAGCAAGCAATGGGGACTATGTTAATGGCCATGACAGTGCACAAGCTGATGTTGAAATGGAACACACTGGAGAGGATGACAAACAGTTTGAAGATGCAGACAAATGATGTTAAGACAGGATGGCCATGTGTGGTGATAGCATAGTCGATGTCACAGAACCATTATTTTATCAACTGAAGATTGTTTTGTGATGATCAATACGAAGCCAGAAAAACAGTTTTCCTAAGTCAGGCACAAACATTTAGAATACACAGTTTTCTAGCAAAAATTTGGAAATGATTCTTTTCTCAGTATGGAGGCTTTGCCAGGGAGGAGGGGGGTCCCATGTCACTTCTTTCTGTTTCACAATGTCTTGTGGTGCTGTTTCAATGTTACTGGATTATGGAAATTTCTAGGCCTAAGGATGATAAAGGTTTTGTTTTGTCACAATTTTAGTCAGTCCTTTTTCCCCCGTTGTCGGTTGTTAAAACCCTGGCAGGGCCTCAGAATGGGCTTGATATTCTCCTGTCAATGAAAATGTTTGGGCTGGTTATttaaggtggctccacatagtttttttggcacgcgaggcatgggcaagaaaatggtgtgagcgcgcatttgtttattttgatgatgtcacaaaaatagaggtttttacggtaactaaaacgtttattgcgcgcattccacacagtgaaattttataacaattggcagattggtaagattttctttgctctcgataacaaaaaaaaagacaacaatttttgtacatacacaaacccaataaacgtaaaaaaagaaaagtgactaaattgcggaaaattatgtaccgattttttttttgtggctttgttagattagacttactgaatgtttcttctgtttgaccaaaaatcgtgaatttttaccgtgtaaaaaccgagaaaatccattgagaggtttgttaaccttgaacaacaagccaacaactcaatcattggttgccatggtaatgagacaagactgccaaattagacttctccataaacgagaaagcctaagctacgtgtatgtgtatattatgcctagtatctcgaaagacagcaataagattgtgtgtattttatttggaagagtggccatttactatatggagccaccttaaacaaagtttagaagccgtataacaaaactacggcctaaaccaatttcaatctggccaacctataaacagtgtccaaaagacatatatcacagactagaaaaacatttatatactttgaatgacccacaaaaaagagatgtgaagGTCCATAATCGTCTAAGTGTTTAAATAACCGGCCCTTTAAGCTAATGAgagccgggttgttcaaagcgcggtaaatctaacccagggttagcatcaattttgattccagttaaataattaatcaaaagagatttttccaatgtatttttgccctttagtttcgtctctgacttgtcttcgcgtgttacttataattagcggcttgtacttagcttttgaaattacttctaacaggagaactgaaatcctcgattaagttttaatcatggtttagcgttaaccagctttcgaacaacCGAGCCAAGAATTTTTCAAATGAGGAAGAAGTTTGACATAATTATATTTATAAGTAGTTTTCCAAGCTCTATGTAATTCTTGTCATTTCTTGCTTTCAAATagacccttccacggttttttccaacttttgatattggccatgtagcggg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03517 all species →	Voldacs	Regulator of volume decrease after cellular swelling	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039924 all species →	Family	Protein ICln/Lot5/Saf5	Interproscan
IPR003521 all species →	Family	ICln	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21399 all species →	CHLORIDE CONDUCTANCE REGULATORY PROTEIN ICLN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000387 all species →	Biological Process	spliceosomal snRNP assembly	Interproscan
GO:0005681 all species →	Cellular Component	spliceosomal complex	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0034715 all species →	Cellular Component	pICln-Sm protein complex	Interproscan
GO:0045292 all species →	Biological Process	mRNA cis splicing, via spliceosome	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006821 all species →	Biological Process	chloride transport	Interproscan
GO:0006884 all species →	Biological Process	cell volume homeostasis	Interproscan
GO:0034709 all species →	Cellular Component	methylosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05019	CLNS1A; chloride channel, nucleotide-sensitive, 1A	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.