Gene detail

Detailed information of TcoG012350.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000604l:455469...474750
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG012350.mRNA1

ATTCTTTCCACGTGCAGACTCGTTTTATCGATTATGTGCAAGTAGTTTGTTTTGTTTAACACGAAATATTTCAGTTTATCGGTCATGTTAGTGCTATTTGAAACGCCTGCAGGCTATGCAGTTTTCAAGCTTCTAGATGAGAAGAAACTGAAGAAAATTGATAACCTATACAAGGATTTTGAGACACCAGATGGTGCTAGTAAAGTAGTAAAGCTGAAGCACTTTGAAAAATTCAATGACACAACTGAAGCCTTGGCAGCTGCAACAGCTACTGTGGAAGGGAAAATGAGTAAAAGCCTCAAAAAGGTTTTGAAGAAAATTGTTGCTAAAGACATTCATCAAGAATTAGCTGTCGCCGATGCAAAGTTGGGTGGGGTAATCAAGGAAAAGCTCAGTTTGAACTGTGTATCAAGTTCAGCAGTACAAGAACTTATGCGTGGCATCAGACTCCAGTTAAACAACCTTATTACAGGTCTCCCTGATAAGGAAATGAGTGCAATGGCATTGGGATTGGCTCACAGCTTGTCACGCTATAAACTCAAGTTCAGCCCAGACAAGGTAGACACCATGATTGTTCAGGCCATTTCTCTCCTGGATGACCTGGACAAAGAACTCAATAACTACGTTATGCGTTGCCGTGAGTGGTATGGCTGGCACTTTCCTGAGCTGGGCAAGATAGTCTCTGATAACCTAGCTTATGCAAAGACTGTCAAGACTATGGGTACTCGTTTAAATGCTGAAAAAACTGATCTGTCTGAGATTCTACCAGAGGAAGTGGAAGAGGAAGTGAAGGCTGCTGCCGAGATTTCCATGGGAACTGAGATTTCAGAAGAAGACATTAACAACATCATCTACCTATGTGATCAGGTGATTGAAATCACTGATTACCGTGCCCAGCTTTACGACTACCTGAAGAATCGCATGACAGCTATTGCTCCAAACTTGACAGTTCTTGTTGGTGAACTTGTTGGAGCTCGCCTCATTGCCCATGCAGGGTCTCTACTGAATTTGGCCAAACATCCATCATCAACTGTGCAGATATTGGGAGCAGAAAAAGCCTTGTTCAGGGCACTCAAGACAAAACATGATACTCCAAAGTATGGGTTGATATTCCATGCATCTCTTGTTGGCCAAACCACACCCAAGCACAAAGGAAAGATCTCTAGAATGCTTGCTGCCAAGACGTCCCTTGCCGCACGAGTTGATGCTCTGGGTGAAGACAGTGGCACAGCTATGGGTATTGAAAACAGAGCCAAGCTTGAAATGAGGTTGAAGTCTCTTGAAGAAAATCAGCTGAGGCGAATCAGTGGAACAGGCAAAGCCAAAGCCAGAGTGGACAAGTATGAGAACATAAGTGAGGTAAAGACGTACAACTCTGCTGCCGACTCGACAATTCCTACACCTGGAAAGAAACGAAAGAGGTCCGAGGAAAATGGTGAATCAATACCAGCTCCCAGAATAACAGTTACACCGGCCACCCCAGCTGCCGAGGAGGATGACGGAGAAACGCCAGCaaagaaatccaaaaaagaaaagaaaaagaaaaaggacaaggacaaggaaCCTAAACAGTCGGACGAAGAGGAAATGGACACATCTGCTGCTGCGACGCCGAAAAGTgaagaaaagaagaaaaataagaagaagaagaaaaaggaaaagaaggaggagGATTCGGATTAATATAGAATCCCAATTTTTATTACATGTATGTCTGTTGTTGTAACACAATAAATATTCACCCACCTCGGATTTTTCAAAGGCTTGCATtttggctgtgtgaccgcgcgatgcggttccagtcaaagcccacatttcacccttgctcaccacagagttctagtagctcagtggtagagcatccgactagatcacggagggtcgtgggttcgaatcccatctggaactcggaatgtttttcgagttaagatgctatttcgtttatatttCATTTCTTAAAAAGACTCACTTGGAGGCTTGCATTTTGATTGCCTTTATTTCTTTTTTTTCTGGTGCATTTTTATCTTCTGTAAGTTATGCATTCTTTGTCGATCCATGGGGGCAGTTTTGTTGCATTTTTGTCATTCCTCGCGAAGCGAGGGCCGAAGGCCCGAGCGTAGCGAAGTTAATAAATTTGGCGGCCGAAGGCCGCTCGGGTGCTCGGGTCTCGGGGGCTGAGCCGCGCCAAATCGAGCGCAGCGGGGTTGGAAAGCTATCCCATGGTGCAACGCAACAAGTTACCCGCGACATTTGAAGAAAATAAACAAACTTTGTAAAATCTCATATTTTGGTGATTTTGCCGGTAGTCGCATTTTATGGTTTTAATTATGGGAGACTTTGGGAATCAGCGAAATAG

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08156 all species →	NOP5NT	NOP5NT (NUC127) domain	Domain	Interproscan
PF01798 all species →	Nop	snoRNA binding domain, fibrillarin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045056 all species →	Family	Nucleolar protein Nop56/Nop58	Interproscan
IPR042239 all species →	Homologous_superfamily	Nop, C-terminal domain	Interproscan
IPR012976 all species →	Domain	NOSIC	Interproscan
IPR012974 all species →	Domain	Nucleolar protein 58/56, N-terminal	Interproscan
IPR002687 all species →	Domain	Nop domain	Interproscan
IPR036070 all species →	Homologous_superfamily	Nop domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10894 all species →	NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030515 all species →	Molecular Function	snoRNA binding	Interproscan
GO:0031428 all species →	Cellular Component	box C/D methylation guide snoRNP complex	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14565	NOP58; nucleolar protein 58	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.