Gene detail

Detailed information of TcoG012418.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000615l:159536...174655
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG012418.mRNA1

GAGACGGTGCAAAGAGATGGTCTTTTGCGCCTCGCTAAATCTCTGTTTTGCGCTTTTTGTCCTGTTCTTTACCATTATTATCACTCTGGGTTGCTGTTCGTGTTGGTTCGATTACTATTCCATGACAGTTGTGGAACGAAGCAAAGAAAACGACAACTGTCAGATACAGATAGAAGACGACAGCGTTAAGTCTATTTCCAAGTGATCGAATCGACTAACGAAGAAGAAAGAAAAACTGCCAGCAGATTTGTTACACTGTTTGACAGCAGAACCTGTGCCAAAGTTCACTTTTGACATAAAGCAGAAAAACAGGAGGGCTCCGTCCGCCAGATTTGTCATTCTGTTTGTGGTCTGTGCGCTGACTGTATTAAAACCCTTCGCTCATGCACACCACTGGATTCCAAAAAAACACGAGATGAATCACAATGTCCGTGTAGGACTGCCACATATTGTAAAACGACAGCCATATTCACAGAAAATGCGCTTCGAAGTTGTCTACGACGACAGTATCGGTGACTTGGTCGAGGCGAAGTACGGTTTGATTACAGGAAAATTGATTCCCGAGGCAGTAGATTACTTTCACGAAACGTTTCGCGTCAAACCAACCAACCTGGCGATAAAATTGCAAAGAACGTGCAAAAATAACGCTTATTTTTTGAAGGACGACAAAGGCGAAGCCGCTGGAGACCTGCAGTTTTGTAAGCTGGATTGTGTAAACACAAAGTGTGGACCTGTTAATGTACCCGCTGATCATCTGGATCAGTGTCGCGTGTGCGATGAGGATGGAATCAAATGTTTCTCAGTGCCGGGAGAAGAGTGGGAGTCTGGGATGGGCGTGGAGTCACGTGATTTCATATTGTACGTGTCCTGTATTCAAACCGATCATTGTAATGTAGCCAATACGGTGGCATATGCATCCTACTGTCAACAGGAGCATGCGCTGGACAGACCAGTTGCTGGGTTTGCAAACATCTGCCCAGATCGCTTGGACACCGATCCAAGGCATTACCCAAACTTGCTGTCCACCGTGAAACACGAAATCTTTCACGCACTGGGATTTAGTGCGGGACTTTTTGCCTTTTACAGGAATGAAAACGGTGTGCCTTACACACCAAGAGAGAAGCATGGCTTGCCGGCGTATAATGAAAAGTACGGCTTGTACCAGTGGAGCTCCAAGATTGTACAAAGGGTGGAAAGGAAAAAATGGGCAACGCGACACGGCGATATATCTCATCAAGTTCATATGATTGTCACTCCGCGAGTAAAGAGGGAAGTAAGGAGACATTTTAAATGCCCTAGCCTTGAAGGAGCGGAGATCGAAAATCAAGGAGGCTTAGGGACTGAGTACACTCATTGGGAAAAACGTTTGTTTGAAAACGAAGCCATGACTGGGACTTACACGCAGAATCCTGTATTCTCGAGAATTACGTTTGCTTTAATGGAGGACACCGGTTGGTACAAAGCTAATTACAGCATGGCGGATGAGCTAGACTGGGGGAAAGGGCTCGGGTGTCTCTTTACCAAGTCAAGCTGCAAAACATGGATGGAAACACACTTGAGAAAGAGAAAACCCGCTGAACCATTCTGCTACACGATCAAAAAATCCCCATTGCGCATGCGTTGCACGCACAGCAAGCTGTCCGTGGCTCTTTGCAATCTTCGTAAGTACAACAGAGCATTACCTCAGGAATATCAGTATTTCAACCATCTACCACTCAGGGAAAAACGTGCGAATAACGATGCGCACCCTGATCATGTAGTTATTCGGGACACAGCATCTTATGGGGGTGCTGTTCCGCTGTCGGATTACTGCCCGTTCTACCAGAAGTTTACCTTAACTGGAACGGACGGTTCAAAGCGAGAAACAACCTGCACAATGGCGGAAAACGCACCCGCCAGAATAGATAACTACGCCTTGGAAACTTATGGCCCTGGAGCCAAGTGCATTCAGCAAGGGCGTGAATGGCTGGCAAAGAAGGGTTTCCTAACGCGAACTATGGTTGATTGGGGTAGCGGATGTTATAAGTATCATTGCGATGGGGAGCTGCAGGTGGAGGTCGGAGGGGAGTTTTACACTTGCCATCGGAAGGGGCAGCATTTGGAGATTTCTGGCTCACTTAACGACTGGAAGATTAACGGGTCATTGGTTTGCCCTTCGTGTGAAGAGTTTTGTGGTGTTCATAAGGGATGCCCTCAACAGATTGAAACCTCTTCAGACGGAATTGTATATGTTGAAGGAAAGACGTCAAAGCACAAGAACGATGCACAGAGCTTACGAAAAACTTCTTCTGTAGAACTTTTTGTATTCATCATTTCAAGAATTGTTCTTAGTTTCTGCTTGATGGTCTGTTTTGTGCCTGGTTTTTATGTTATTGACATGACCAATTAATAACAAGGTTTAAACGATAAATTAATTTTAAGTTTATAATTAGGTAGTAAAGACAAGAATCAAAGAACTGTCGAAATAAAACAGGCAAGAAAAGCAACTTTTCTTGTACAAGTTTTCTCAGTTAAGAAATTTGAGTAAACAGTGCCTTAGCTTTGTACATTCTTTAGTGACTTTGTTCAAATTAGCCGTCAAATTATGACCCTTGATTTAAAACTTGTATACAGACGTAAAAAAGTAACATTAGTAAATAATTGAAACAATTTTGTAATAAATATTAGTCCTTTTGGAAATAACTCTTACTGTTTATAATTTGTACAATCATTTAATAAAGAAAACTCCC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01457 all species →	Peptidase_M8	Leishmanolysin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001577 all species →	Family	Peptidase M8, leishmanolysin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10942 all species →	LEISHMANOLYSIN-LIKE PEPTIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0007155 all species →	Biological Process	cell adhesion	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13539	LMLN; leishmanolysin-like peptidase	EC:3.4.24.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.