Gene detail

Detailed information of TcoG013003.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000641l:179365...212436
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TcoG013003.mRNA1

ATGGGAGTTCCAGCGTTCTTTCGTTGGCTTTCGAAGAAATATCCCTCGATAGTGGTCCACTGTGTCGAGGAAAAGGGTCGTGAAGTTAATGGTGTAAGAGCCCCAGTGGATACAAGTTTACCAAATCCTAATGACTATGAATTTGATAACCTGTATCTTGATATGAATGGTATCATCCATCCATGTTGTCACCCAGAAAACAAGCCTGCTCCTAAGAATGAAGATGAGATGATGGTGGCCATCTTTGAATACATTGACAGAATTTTCTCCATTGTGCGACCAAGAAAGTTACTCTACATGGCTATAGATGGAGTGGCTCCAAGAGCAAAAATGAATCAACAAAGATCTCGCCGTTTCAGAGCATCAAAAGAATCTAAGGAAAAAGCTGAAGATATTGCACGGATACGAAGTGAACTACAGTCCAAAGGAGCAGCCCTACCCCCTGAAAAAGAAAAAACAGAACACTTTGACAGTAACTGCATTACACCAGGTACAGAATTCATGGACAACCTGTCAGTGTGCTTGAGGTACTACATTGCTGACAGACTAAACAATGATCCTGGATGGAAAAATATTAAGGTGATCCTATCAGATGCTAATGTACCAGGGGAGGGAGAACACAAGATCATGGACTACATAAGAAAGCAGAGAGCAAATCCTAATCATGATCCTAACACAAAGCATTGTTTAAATGGAGCTGATGCTGACTTGATTATGCTTGGGCTTGCAACTCATGAACTTCATTTCACAATCATCAGAGAAGAATTCAAACCAAACCAAAAAAAACCATGTGAGATCTGTGGACAAATAGGGCATGTAATGGATGAATGTATGGGGCTTCCAAAAGAAAAACAAGGAGAGTTTGATGAGTTATCTGCACCAGTGGGACAAGATGTAGAATTTATTTTCATCAGGCTTAATGTATTACGAGAGTACCTTGAACGTGAACTTAGAATGGAAGGCCTTCCATTTCCCTATAGCTTTGAGCGCTGCCTTGATGACTGGGTATTCATGTGCTTCTTTGTAGGAAATGACTTCCTTCCCCACTTGCCATCTTTAGAAATCAGGGAGGGAGCTATTGACAGACTTGTGGGGATTTACAAGAGAGTTTTACCAAGATGTGGGGGTTACCTAGCAAAGCATGGAATTGTGGACTTGAGTAGAGTTGAGACAGTTCTAAAAGAGCTGGGATATGTTGAAGATGAGATTTTTAAGAAGCGACAGGAAAATGATTTAGCATACAAAAGACGTCTGAAGGCAAACAAAGAAAGGGAGAGACTAAAAAGGCAGAGAATGGATGCACCTCTATGGACACCCAGTGGTCAATTCAGTCCACACGTCATCACCAACACTCCCTCACCTATAGTGTCTCCACGCCAAGAGGCATATGCCATGCGACAACAAGCCATGTCTTACAGTGCTGGGAACACAAAACCACAAGATGTAGCCAATAAGAGTGCAGCAGCAAATCTGAGAGCTATGCTTGCTACTCCTTCGCCAGATGCAAGTATGTCATCTGCTGCGAGTACACCAAATTCTGTCCCAGAGTCAAACAAGAGAAAGAGAGATGATGATGATGATGAAGAACCACAAGATGATATCAGGTTATGGGAGGCAGGGTGGAAGGGCCGTTATTACCAAAACAAGTTTCAATTATCTGAGAATGATGAAGGATATCATGACTTCAGGAAGAAAGTGGCTGATGCTTATGTCGAAGGACTTTGCTGGGTGCTGCTTTATTATTATCAGGGCTGTCCATCGTGGAAGTGGTTTTATCCTTATCATTACGCACCGTTTGCATCTGATTTTCGTGATCTTGCTTCACTTCCCAACTCATTTGAACGTGGAACACAACCGTTCAAACCCTTGGAACAGTTGATGGGCGTTTTTCCAGCAGCCAGCGGCAACTTCATTCCTCCAACGTGGAGAGAACTTATGTCACACCCTGATTCACCAATAATCGATTTTTATCCTCTTGATTTTGAGATTGACCTGAATGGAAAGAAATATGCTTGGCAAGGTGTAGCTTTACTGCCCTTTGTTGACGAGAAGAGACTGCTTAGCGCTCTAAGGAATGTGTATCCTGATCTGACAGACATGGAAAAGAGGAGGAATAGTCGTGGTAAAGATCGCTTGTTTCTTCGTCAAGGCAATCCAGTATTTGACTTCTTTGTTGGTTTGTACGAAGGAGGTGGCATTAAAGAGGCAGTCGATATAGTAGCACAGCTGAGTGGAGGTATGTCAGGCAAAGTGCAGCCAGATGATGTGCCTATCTTACCACACAGACCCGTTCCGTCTCCTATTCCTCAACTTTACGACTTGAAGGACAACAGAACCATAAGTGTGTTGTTCACCGATCCTGTTTATGAAGAGGATCATATATTTAAAGCAGACGTTTTGCCCAAAGCAGACCCTCCTGCCCGTGTTCTGAAGCCTGAGGGTTATGACAATAACAGACAATACAGACCTGTTATTGGAATGAATGCCAACAGAACGTCATTTGCTCAGCTGGGTGACGCAGGACGACGGATGCTTaaTTTTCAAAGAGGCGATCTTTTTCGTCCCCATACTCCAGCCAGCTACGTGCCGCCCTTTCGGTCGAACTCAGGTCCCCCGCAGCATAATCCCAGGCATGGTTACCCTAATCAGCCAAGATCCAATCCGGGTACTCCTCTATCGTCACGTGATTATAATGACTCAAGGCGACAAAACTATGACAGAAATTGCGCTCCACAGTACAACACAGGTGGTTACCAAGGCAACCAATCACATTACAACTCAGGTGGTTACCAAAGCAGCCGACCAAATGCCTGGTCGCAAACGAATCCCTACTCTCGGGGACCTGGGTCAAGTCAATCCCAATACTCTCGTGGTAACTATCAACACTCGTCACGTGACCCgcggcagcagcaacagcagcagTATAACCAACGGCAAGGCCCACCAgccaggGATGACCGTCGCCATTCGTACCCGCTTTCCAACTACCGCTACCGGCCTTACTAA

Transcript

TcoG013003.mRNA1

GTCcatttcaatctcataatctttatcagtctcattctTACGTTTTTTACTCTTTAAATAACCTAAACTAAGTTGTTTTGAGACATAGGAATGGGAGTTCCAGCGTTCTTTCGTTGGCTTTCGAAGAAATATCCCTCGATAGTGGTCCACTGTGTCGAGGAAAAGGGTCGTGAAGTTAATGGTGTAAGAGCCCCAGTGGATACAAGTTTACCAAATCCTAATGACTATGAATTTGATAACCTGTATCTTGATATGAATGGTATCATCCATCCATGTTGTCACCCAGAAAACAAGCCTGCTCCTAAGAATGAAGATGAGATGATGGTGGCCATCTTTGAATACATTGACAGAATTTTCTCCATTGTGCGACCAAGAAAGTTACTCTACATGGCTATAGATGGAGTGGCTCCAAGAGCAAAAATGAATCAACAAAGATCTCGCCGTTTCAGAGCATCAAAAGAATCTAAGGAAAAAGCTGAAGATATTGCACGGATACGAAGTGAACTACAGTCCAAAGGAGCAGCCCTACCCCCTGAAAAAGAAAAAACAGAACACTTTGACAGTAACTGCATTACACCAGGTACAGAATTCATGGACAACCTGTCAGTGTGCTTGAGGTACTACATTGCTGACAGACTAAACAATGATCCTGGATGGAAAAATATTAAGGTGATCCTATCAGATGCTAATGTACCAGGGGAGGGAGAACACAAGATCATGGACTACATAAGAAAGCAGAGAGCAAATCCTAATCATGATCCTAACACAAAGCATTGTTTAAATGGAGCTGATGCTGACTTGATTATGCTTGGGCTTGCAACTCATGAACTTCATTTCACAATCATCAGAGAAGAATTCAAACCAAACCAAAAAAAACCATGTGAGATCTGTGGACAAATAGGGCATGTAATGGATGAATGTATGGGGCTTCCAAAAGAAAAACAAGGAGAGTTTGATGAGTTATCTGCACCAGTGGGACAAGATGTAGAATTTATTTTCATCAGGCTTAATGTATTACGAGAGTACCTTGAACGTGAACTTAGAATGGAAGGCCTTCCATTTCCCTATAGCTTTGAGCGCTGCCTTGATGACTGGGTATTCATGTGCTTCTTTGTAGGAAATGACTTCCTTCCCCACTTGCCATCTTTAGAAATCAGGGAGGGAGCTATTGACAGACTTGTGGGGATTTACAAGAGAGTTTTACCAAGATGTGGGGGTTACCTAGCAAAGCATGGAATTGTGGACTTGAGTAGAGTTGAGACAGTTCTAAAAGAGCTGGGATATGTTGAAGATGAGATTTTTAAGAAGCGACAGGAAAATGATTTAGCATACAAAAGACGTCTGAAGGCAAACAAAGAAAGGGAGAGACTAAAAAGGCAGAGAATGGATGCACCTCTATGGACACCCAGTGGTCAATTCAGTCCACACGTCATCACCAACACTCCCTCACCTATAGTGTCTCCACGCCAAGAGGCATATGCCATGCGACAACAAGCCATGTCTTACAGTGCTGGGAACACAAAACCACAAGATGTAGCCAATAAGAGTGCAGCAGCAAATCTGAGAGCTATGCTTGCTACTCCTTCGCCAGATGCAAGTATGTCATCTGCTGCGAGTACACCAAATTCTGTCCCAGAGTCAAACAAGAGAAAGAGAGATGATGATGATGATGAAGAACCACAAGATGATATCAGGTTATGGGAGGCAGGGTGGAAGGGCCGTTATTACCAAAACAAGTTTCAATTATCTGAGAATGATGAAGGATATCATGACTTCAGGAAGAAAGTGGCTGATGCTTATGTCGAAGGACTTTGCTGGGTGCTGCTTTATTATTATCAGGGCTGTCCATCGTGGAAGTGGTTTTATCCTTATCATTACGCACCGTTTGCATCTGATTTTCGTGATCTTGCTTCACTTCCCAACTCATTTGAACGTGGAACACAACCGTTCAAACCCTTGGAACAGTTGATGGGCGTTTTTCCAGCAGCCAGCGGCAACTTCATTCCTCCAACGTGGAGAGAACTTATGTCACACCCTGATTCACCAATAATCGATTTTTATCCTCTTGATTTTGAGATTGACCTGAATGGAAAGAAATATGCTTGGCAAGGTGTAGCTTTACTGCCCTTTGTTGACGAGAAGAGACTGCTTAGCGCTCTAAGGAATGTGTATCCTGATCTGACAGACATGGAAAAGAGGAGGAATAGTCGTGGTAAAGATCGCTTGTTTCTTCGTCAAGGCAATCCAGTATTTGACTTCTTTGTTGGTTTGTACGAAGGAGGTGGCATTAAAGAGGCAGTCGATATAGTAGCACAGCTGAGTGGAGGTATGTCAGGCAAAGTGCAGCCAGATGATGTGCCTATCTTACCACACAGACCCGTTCCGTCTCCTATTCCTCAACTTTACGACTTGAAGGACAACAGAACCATAAGTGTGTTGTTCACCGATCCTGTTTATGAAGAGGATCATATATTTAAAGCAGACGTTTTGCCCAAAGCAGACCCTCCTGCCCGTGTTCTGAAGCCTGAGGGTTATGACAATAACAGACAATACAGACCTGTTATTGGAATGAATGCCAACAGAACGTCATTTGCTCAGCTGGGTGACGCAGGACGACGGATGCTTaaTTTTCAAAGAGGCGATCTTTTTCGTCCCCATACTCCAGCCAGCTACGTGCCGCCCTTTCGGTCGAACTCAGGTCCCCCGCAGCATAATCCCAGGCATGGTTACCCTAATCAGCCAAGATCCAATCCGGGTACTCCTCTATCGTCACGTGATTATAATGACTCAAGGCGACAAAACTATGACAGAAATTGCGCTCCACAGTACAACACAGGTGGTTACCAAGGCAACCAATCACATTACAACTCAGGTGGTTACCAAAGCAGCCGACCAAATGCCTGGTCGCAAACGAATCCCTACTCTCGGGGACCTGGGTCAAGTCAATCCCAATACTCTCGTGGTAACTATCAACACTCGTCACGTGACCCgcggcagcagcaacagcagcagTATAACCAACGGCAAGGCCCACCAgccaggGATGACCGTCGCCATTCGTACCCGCTTTCCAACTACCGCTACCGGCCTTACTAAGATGGCTGACAGGCCATCACTGCTAAAACTCATGTTATTATACCACAGGGATACCACAGTCGATCAACAACAGAGACAGATAACAATGCGGGGGGTGAAATCCATGAGGATGTCATGTGTTCTCGTTAAGTTGTCGCGGTGGCTTAAAACGGTTAAATAACTCTCATAACTACAACAATATGGCCTTTCTATTTATCATATAGTCAGTTATCGTTTTATATTTGACCTGGGGTCAAATTGCGTCACATTGGAAGAAAAGTAGACATTTATATGGTTCAAGACGCAAGAATTGCTGGACAATTTGTTTTGGAAGTGAAAAAGATACATTCACCTAGAACACTTTTTTTAGCAGCTCTTGAAAGAGGGCCAAAAATAAAACAATATAAGAAAGAAAGAAATGTAATCCAACAACACAatgggcctttatcacgcggcggccatgttgattcccaggagaataaaatgctttgttttcccttgcttaacctcgttctcaacttttttactgcgaggcttgggggtaaatcttttgtttttatacaaaatggcggggcgtgataaaagcccatAGGGAAGTACTGCTTTATATCTTTCAAACTTTGCTTCTTTCGAGTTGAAGGATTTAATGGGAGGAGGACCACACCCTCAAATCAGAGTTactgcactttacaataacgcacgaagtctgatgttgaagccacgaattgttcctttcttttacaatgctgtcactcatagtttcgaagataatttggagcgctggaaaacagaaaaaacaaaactgattaaaatccaccaatcaagactcgaaatcgtgacctttgaactctgatgaactaatttgttctacgagatagctcaaactgttgagatgataggcggcaatgaaaaaagccactgttggctgagttttaatacttcacatgtttttgaaaagcgcagtTAAGTTTAACAATTATTAGCCTGTGTATCGGTTAGGACACGAGATTCCAGGGTGCGCGAGAGTTTTAAGTGTGCGTGGGAGATTTCTGGATGCACCCGATCGAGATTGAAAAACACACCCAGAGGGTGTGTGCGCTCAAAATTCGCGCGCTGTTCTGAGTGAATTTTTTTTCTTTCATTTGTGTCGTTGCCCCCGAGTTAATGAGCAGAAACGTTTTAACGCAGAAACAGTTAATGTCCATAATTTTTAAATCAGGGATGCCGCGTACTTCCAGAGTACCTAAATTAAAAATATTTAATTCATTCATGATATAGGGCCTTTTTGAAAGTGGAGTCTTTCAGTATACTACACAATAAGAATTGCTCTGTAAATAATTGAATTTCTAGTTTATCTTCTGCTGCATTGTTTGTAATAAATATACTCTGGCATGGTGCGTTTTGAGTTGGTGTAGACTCGAATATAGTGGCTAGTCTCCAATATATCTGTTGTGGTTCAatt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03159 all species →	XRN_N	XRN 5'-3' exonuclease N-terminus	Family	Interproscan
PF17846 all species →	XRN_M	Xrn1 helical domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017151 all species →	Family	5'-3' exoribonuclease type 2	Interproscan
IPR027073 all species →	Family	5'-3' exoribonuclease	Interproscan
IPR004859 all species →	Domain	Xrn1, N-terminal	Interproscan
IPR041412 all species →	Domain	Xrn1, helical domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12341 all species →	5'->3' EXORIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004534 all species →	Molecular Function	5'-3' RNA exonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004527 all species →	Molecular Function	exonuclease activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12619	XRN2, RAT1; 5'-3' exoribonuclease 2	EC:3.1.13.-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.