Gene detail

Detailed information of TcoG013316.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000654l:257873...272828
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG013316.mRNA1

ATGGCGACCTTGTAGGTTTCTTTACTACGAAAAAGCGTTAAAACGTAAAAAAAGATTGATCATATCATTTTTTTTAGAGGAAAACTCTGGTTACTATTCATGATTTGAAACTTATCGAATTTTGTCGTGTTTTGCATGGGTAGCTAGAGTACGTCAAATTAATTTTGCGCGTTTGAGTTTCACATGAAGGTTTATAAGCTGATCTTATCTGATCTAGCGAATGCTTTTAAGGCCACTACGAACTGGACTCCGTAAGTACAAGCGTACGCATTTAACAACAAAGTACACCAGATTACAGAAACTTAGCTTGAAGTCGCATCTTCAAAATTCAGCTGGTACAGATGTGAATCTCGACTCGCAAAATCTCAAACTCGTCACGAAGGCATGGATAAAACGATTAAAGGAAGCAAGTGTACCAGAACCGGAACTTTCAGTGAAGTACATCACAGAATATGTTCTTGGAAAGGAGAGGTCGTGGGGCTGTGATCTTAAAGAAAATAGCCAGAGTTTAACAAAGGAGGAAGCAAGAAAACTGAATCAATTGTGCAAGCAAAGACTTCAAAGAGTTCCTGTGCAGTACATTATTGGTGAATGGGATTTCCGATATTTAACGTTGGCGATGAGGCCTCCTGTATTCATTCCAAGGCCTGAGACTGAAGAACTCGTCGATCTGATAGCCAGACACCATGGTCTTACTGATAAAAAGGATGAGAAGTTTTCGTTTTTGGAAATTGGTTGTGGAAGTGGGGCTATTTGTTTATCCATACTTTCAGAATTTCCTCAGACAACTTGTGTAGCAATTGACAAGAGCAGGGAAGCCGTCAGTCTCTCAAGGTACAATGCAAACAGATACAATGTCAGTGGCAGGATTTTACTTTACCGTGCCGCTGTTCAATCTGTTTTGCCGATACTTGGTCGCAGAAAGTTTGATGCCATCATAAGCAATCCCCCCTATATTCCTGAATGTGATATGGCCTCGCTACAGCCTGAAGTTTCAAGATACGAAGATGTGGGAGCATTATATGGCGGGCTTCATGGATTGGATGTAGTTAAGGACATATTACGTGTTTCGCCAACAATGCTCAAACCTCAAAGTTCTGTGTGGTTAGAAGTGGACATTTCTCATCCCGAGTTTATCAGTCAGTGGATAAGTAACCATGACCTTGGTTTAAAATACTCCGCAACTTTCAACGACTTCACGCAAAGGCCAAGGTTTTGTCACATCATCCGAAAACGATGACTACGTGACATGCGGCATCAAACTAGTTGTACTTGTCATGGTATTGCGTTGCATCTTCAAATTAAGGAGTATTGGGATAGCATTGAATGCTGAGAAGTAATTCGGCGAAGCTGTCTTTGGCAATGGTGACAGCGTTACGGGTGACATCAAAAGGCAGACAGGTCCCAATTTTTCATTACTTCAAACATCAAGGAGTACTGGGAGGACAGTGAAGCcgacttcgtccccagatacttctctgctttcaaaatggcgggcaggcgcagaaaccaccggacaaggacccgccattttaaaagtggagagggccctggaaacgagcttgaTTTAAAGCAGCTGTGGTTGACCATGACGAGTGAGTGCTTGATGCGTGACATCAAAAGGCAGACAGAAGTCCCGGTGTTGTGTTACATTTTTAAATCAAGCAGTATGGTGATAAACTCAACATTGGAGGCGATATTAAAATTTAGAAGAACCACAGTCTGTGACAATGATTGCCGGACAACAAAATGGTGGTCGCTTTCCTGGCATAGTATTGAATGATGAAGGTTCAGAGCAACCATCTTTCCAAGTTTGCATTGAAAGACATTTTAATGGACCGTAGTCTACAGAAAGTGTAATGTTTCGAGATGttaaagatgaattacagtccgtactgcacaatctcagctcggcaatgtcaaggaacgtttactagcgaaaatgaaaattacgggacaaacataccttttccttcattattaacgtcagata

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05175 all species →	MTS	Methyltransferase small domain	Domain	Interproscan
PF17827 all species →	PrmC_N	PrmC N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007848 all species →	Domain	Methyltransferase small domain	Interproscan
IPR019874 all species →	Family	Protein-(glutamine-N5) methyltransferase, release factor-specific	Interproscan
IPR004556 all species →	Family	Methyltransferase HemK-like	Interproscan
IPR050320 all species →	Family	Protein N5-glutamine methyltransferase	Interproscan
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR002052 all species →	Conserved_site	DNA methylase, N-6 adenine-specific, conserved site	Interproscan
IPR040758 all species →	Domain	Release factor glutamine methyltransferase, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18895 all species →	HEMK METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0006479 all species →	Biological Process	protein methylation	Interproscan
GO:0008276 all species →	Molecular Function	protein methyltransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0032259 all species →	Biological Process	methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02493	hemK, prmC, HEMK; release factor glutamine methyltransferase	EC:2.1.1.297	Translation factors	ko03012	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.