Gene detail

Detailed information of TcoG016637.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000849l:391925...395741
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG016637.mRNA1

ATACAATTTGATCTCCCTTGATATCGATTGGTCAGGGGGTGAACTCCTTGGAGATCCTTGGAAGTTTTCTTTAGCTCCACCCTTCCCTTCTAGATAGCCCACCTCGTTAAATTACGACATTCGAGACTCTTGTACAGCGGAGCTTCCCCTTGAAAATCACCATTAATGTCGACATACATGACTTTGGTTTGTTGACAAAAATTTCACTAACATGTACAAAGCATTTGTTTCCTGTAATAATCTGTTGGACGTCTCCAGAACTTGCATGATTGTCACATTACCGAACTGAGTTTGTTGGTAATTAGGCAGTTCACGGAACTACGGGAAGATATGCGTTAATTGTAACACGGCGATATCAAATGGGTAATAAGCTGATAAAATCACGAACTAAGATCGACAAACCGTCAGTTGAGATCTTTCCCTGTAGACCTGTACAGCCTTTGAGAAGAACAATCAACGGAGCTACGAGCTTAGAATTTTCCAATTTTCCTCGGGCCATCGCTCAATTGCCACACAATCGCAGTTCTGGATCAAACGAAGACGGATTCGGCAGCGAAGAAGAGATTCACTGTTGTGCTTTCTCGCCCGACGACGAATCCTTACTTGTGACTTGCTCCACACCCTGTGGCCCGATGAACAGACCTGACCAAGGTCTCGGCCATTTAAGAGTGTTTGACATCAATTCAGGATTGTGTAGGAAGGAAATCCTTACTTATAACTCTCAAGAATGCGATATCTCAGCAGACGGCGATCTAATCACTTTTGTCACAAACTCCGGCAGAGGAGAAGTTGCACTGGTCAAACGAAGCCGAGATTCTCGAAGCGGAATCTCGGAGCGAGTCGATAAATTTCATCCCAGTTGTACCGGAATAACAGGACAGACTCTTTCTTGCAAGTTTTCACCAGATGCCAGACATATTGTTAGCGCGGCATCGCTGGATTATCACAGTATTCGAGAAACGAACGAGTTGCGATTGTGGAACGTCAAGTCCATGCAGACGGTGAAGAAAGTCGTGCTACGCGATGTAACAGATTTTTGCGGCTTCGTTACAAGTTGCGAGTTTTCTCCTGACGGCCAATACATCGCCGTGTCCACTTCTCAGGAACAGTTGTGCATTTTAAGGAGCAAGAATTTCGACATTGTGGCAGTTCTGAGAAAGAGATGCAGAGGAAACAGGTGTTGGAGTGTTTTTAATCCAAGATGGAAATGCGAGGTACTCGCGTGTTGTTTACAAGATGGACGCTTGGAAATCTGGCAAAAGATCGAGCACCCGTCTACCTGTGAAGTGCGGTACGTCTGTGAAAAAGAACGCAAAGTGTCATTTTCCCGGAGATTGTACTCTTGTCGGTATTCACCAGATGGTCTGATGTTAGCTGTGGGAACATCAGATGCTAATATTATGGTCCTCAATTCTGACACCTTGGAATCACTATTCTGCCTAGACTGTAAGTCGATGCCAGACCCTTACAGACCAAGAATTCAAAACACTACTGTCCACTGTATTGCATTTGCTAAATCACAGCAGTACTTAGCAGCTGGCTACAGTGATGGACTGACAAGAATTTGGGCCATGCCTGTTAGGTTTGACTTGAAGCATTTGTGTCGAGTTGTCATCTTGCACAATGTGCCAGCCAGTAAAATCAATTGCCTTCCAATTCCTAGTGGTTTTAAGACATACCTTCTTAACAGATGCAGTTAAACCAGTCACTCCCTAAGAGGGGCCATGAAAAGAAAAATTCAAGAAAAATCCTGATTATGCCACACAATAGAATTTTAtctgcgactctaaagttagaagtggagcaaggcacagcagtgttagcgtgttgcctggacttcagatctgaagatcattggtttaaggcctctatggtcttggatgtcatgttgctttcatcaacaagaaactttactccccattgtctccctcgacccgggtgtataaatgggggtaaccatgtcatggactagcatctcatcctggggggaaagtcatgaaaaaataacataccttcaacgatattccaatgacaacaaatgggcgaagaagtcgctgtcactggaagcttcatacccggcatcgaatttagcctgaagccacgacctaaatatccaattttccaaatatattcatttgtggtttctagaccacgctatcttattttctgcttgatcctcaacttcctcttccgtccccaattggttctttaccctccaccgccgccactagtcaacgcaattttgaaattgacggttcaacttgaaaaattcaggctgaacttttcaagtttcgattcaaaaaactcacgcatgcgccctcgtgacagtgtccctttaaGCTTCGGCCATGTGGGGTACCTGTGGTTCGTGCCTTTACCAAAACTTAGAGTCATGGCTTGGACTTCTGCCTTTGGGAGTGAAAGTTGACTTAAGTTATTTTGGCATTATATAAAGACATATCAGAATTAAATCTCACAAGTGATCACCCTGTGGACCATGAACAGTGGTCACTCACAGCAGATGGTCACttaaggtggctccatataatttttggtgcaccaggcatgggcacgagtgcaggtttattttaatgatgtcatgaaaatatagtggtttttatcatggtagctaaaacatttattgcgtgcattccacttggcagatttttataaaaattgacaaattggtaggattttcttggttcgcaatcacaaagaaaagacaacaatttttgtacatacagtacacaaacccaatcaaaggcttgttcgagccaacccgtgatgctaacggaaacgcaatattgcagtttttttttgtggaaattaaatgtaatgacgaatgcaaacaaacaaaaaaaaagaaaagaaactttcagctcaaagaagaaaaaagaaaaaaatgcatcccccgcgggattcgaacccacgtccatcagtggcctcctgctcaagagtactttcacttacccactgcgctaccaaggatttgactgattagtgaggtcaaattttgttatttcaacgtagatatgaggaaaaagtttacatctgaatgatggatcgagcgagcaagtgagtgagtgagtgaattggccgctgttaccgattacccgttcattacgcatgtgcgtattcatgggttaataaacataaaaaatgaaaagtaagttgccgaaaattatgaacatatttttttatggctttgtcagattagacagggtactgaatgtttcttctgtttcaccaaaaatcgtgaatatttactgtgtaaaaaccgagaaaatcagttgaaaggtttgctagccttgaacaacaagcctgacaactcagtcattggttgccatggtaatgagacaagactgcctaattattagagttctctgtaaacgagaaagcctaaactgcctttatgtgtatattatgcctagtatcgcaaaacaacactcaaaagacagtaataggattgtgtatatttatttggaagactggccaataactatttggagccacctAACagggacactgtcacaccaataacaaaattttgcttaccttatttctaagttacatcgccaactgctaccaataatatacaatttaatctgttaaaaaggttctatGtaattatggtaattgaactgagtggagtgcaatttggtctgaaatcatacgtgatttcaaaattgaacaagcgcgcagtgtgagttcgatttgaaatcacaagtatgatttcagaccaaaatttcacgacatgaagttcaattaccactttattacatccattttgaaatcgcacaatttaattgcccaaaaa

Protein

Gene family

Family type	Membership / link
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|SOCS · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07525 all species →	SOCS_box	SOCS box	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR051983 all species →	Family	WD repeat and SOCS box domain-containing protein	Interproscan
IPR001496 all species →	Domain	SOCS box domain	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR011047 all species →	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan
IPR036036 all species →	Homologous_superfamily	SOCS box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15622 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0035556 all species →	Biological Process	intracellular signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24743	WDR31; WD repeat-containing protein 31	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.