Gene detail

Detailed information of TcoG016861.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000866l:1320732...1353650
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TcoG016861.mRNA1

ATGGAGTACTTGTCCCGGGGTTTCAAGTCTGTTTTGGGTAATCAGCAAGCCGGCTCGCAACCTTCCGCTCACGAAACGGTTGAGCGATTGTGTGACCGTGTTGCTTCTTCAACTCTTCTGGAAGACAGGCGAGATGCCGTGCGTGCGCTCAAGTCACTTTCAAAGAAATTTCGTCTAGAAGTTGGAACACAGTCCATGGATCTACTGATAAATGTTTTGCAAACAGACAGGAATGATACAGAGATCACTGGCCTGGCATTGCAAACTCTGTGTAACCTGCTATCTGCCGACCCACAAGATGAGGGTGGCCGGGATCCTGGACAGACAGCCTCAGATGCTGAGTTAGGAGTTCAATTCACAGAGATTTTTATCAAGAAAAGTGATAATGTCACTTTACTACTTGGCCTGTTAGAGGAATATGAATTTCAAGTTAGATGGCCTACTGTTAAACTTCTGACAGTCTTACTGACAAACAAAAGTCACCAGCTTCAGCAGTGTATTTTAGTTAGCCCTATGGGGGTTTCCAGACTTATGGATTTGCTATCTGATAGCAGAGAAATAATCCGTAATGAGGGTCTGTTGTTGTTGATTCAACTAACAAAGTCTAATGCTGCAATACAGAAAATTGTTGCCTTTGAAAATGCTTTTGACAGACTCCTTGAGATCATCACAGAGGAAGGTTGCAGTGATGGGGGTATTGTAGTTGAAGATTGCTTACTACTGATGCAAAATCTCTTGAAATTGAATGTTTCAAACCAAAATTTCTTCAGGGAAGGAAGTTATGTTCAAAGACTTACACCATTTTTTGAACTGGAACAATCGCCTTCACCAGCACCCACTGAAAACCAAGATAACTCCTGGTCAACACAAAAAGTATCAAATGTAAAGCTTATGTTACAGCTTGTTAGAGTGCTAGTGTCACCAGACAATCCTCAACAAGCAACAGCTAACTGTCAGAAAATTATGAATCAGTGTGGTCTGTTGCGGCTGCTCTGTGGTATACTTATGTCAACTGGAATTCCTGCAGACATTCTTACAGAGACCATTAACACTGTATCTGAAGTCATACGAGGATTCCCTGCAAATCAAGAATACTTTTCTCAAGTAAATGCTCCATCTAACCCTCCTAGTCCTGCCATTGTTGTTCTTCTGATGTCCATGATCAATGACAAGCAGCCGTTCAGTCTACGATGCGCTGTCTTATACTGCTTTCAATGTTATCTGTACAAGAACGAGCAAGGCCAAAATGATATTGTAACCACATTACTGCCATCATCAGCTTCTGCTGCTACCAATGTATCAGCAGGCCAGTTGCTCTGCGCTGGATTGTTCAGCCCTGATCCTCTGTCCAACTGGTGTGCAGCAGTTGCTCTATCTCATTGTTTAAAAGGGAACCCCACCCAGAAAGAACAACTTCTTAGGGTGCAACTTGCTACAAGTGTTGGGAATCCTCCCGTGTCATTGTTACAACAGTGTACTAACATGCTATCACAGGGAGGAGAGATCCAGACAAGAGTTGGTCTGTTATTGTTACTCTGCTCCTGGTTATCCAGTTGTCCTTTGGCTGTAGCTCATTTTCTCCATAATTCAGCCAATATACCATACCTGATGGCGCAAGTTGAAGTTCATGGTGAAGAAGCTGACAGACTCGTGGGTGCCCTGTGCGCTCTTCTTCTAGGAATCTGTTTGGACAATAACGACAATTCAGTAGCAACCTGTCTAAAGGATGATCTTCGCAATTTAATAATCAAAAGAATAGGAGCAGATAACCTACTGGACAAGATCAGTTTTATTTCAAAGTCCGAATTTTTCACTGCAGCTGTAAAATCACCAGAGGTTAAAGTCGAATCAGAGAGACAAGTCCTATTTGATCACGAATTTACTAAACTTTTTAAAAAGCTAGAAGCTGCTGTCACAAAAGCTATCGAAGAAGAACCTTTACAGCAACAAATGACAAACCATGTAAACGGGAAGGTTGCTCAAGGAATGGATAACCATGACTCCATTATATCGTCATACAAGGAACTTATCAGAGAACAGGATGAAGAAATCGGGAAACTAAAATCAAGATATGGGGACATGGAATCCTCTTATAATCAGGCTCAAGTTCAAATTCAGCAGCAATCGCAAGAAATCCAACAACTTCGTGAACAGCTTCTGGTCGCACAGAATTTCAAACCTCAAACAGGAGTGAGTGAATCGTTCTTTGATGAAAACATGGAAATATCTAATCTAAGAAATCAAGTGAGTGATTTGCAGCTGAACCGAGACTCGCTTCAGGAACAAATCACGACCAAAGATGAAAAGATAGGAAAGCTGGAAAAAGATCTTGAGGTCTCCCAGGCATCTTTAGCTATAGCTCATGCAGCCGCAGAACTCGCCGGCTCAGACATGACAGATCTATCATCAGTGCCTGCGAGCCTCACCAGTCAGCAGCTGGAAGAGTTGGAACAACTAAGACGAACTGTTAAGTCACTGCACGAGGAATTGGACGTGTTGAGGTCTTTAAATACGGAGCTGCAGAATGAAATAGAAGCAGTGAGAGAGGAAGCACTGAACACGCCGACCAACAGTACAGATGAAGTGAAGGCCGAGTTAGAAAGAGCGCGAACTGAAAGCCACGACAAAATTAGATTACTTGACGAGAAGTTAGCAGCAGCCGAGACAGAAATGAAGGCAATAGTAACGGAGAAAGCAGAGTTAGACAAAGAACACGATGATCTCCTGGTTATGTTGGCTGAACAGGATGCTAAAGTACGGAAATACAAGAAACTGGCGAGAGATGCCGGACAAGAAGTCAGCgaagacgacgatgaagattgcgatgaggacgatgaggacgatgaggacgatgaggacgaagacgatgatgatgaagatgatgacgaggataatgaagatgaaaatgaacaagaaAACATGGAACACCAACATGAAGACAGCACAACGGTCGACGATGAGGAACTCACATGA

Transcript

TcoG016861.mRNA1

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04871 all species →	Uso1_p115_C	Uso1 / p115 like vesicle tethering protein, C terminal region	Family	Interproscan
PF04869 all species →	Uso1_p115_head	Uso1 / p115 like vesicle tethering protein, head region	Repeat	Interproscan
PF18770 all species →	Arm_vescicular	Armadillo tether-repeat of vescicular transport factor	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR006955 all species →	Domain	Uso1/p115-like vesicle tethering protein, C-terminal	Interproscan
IPR006953 all species →	Domain	Vesicle tethering protein Uso1/P115-like, head domain	Interproscan
IPR041209 all species →	Repeat	Vesicle tethering protein p115, armadillo tether-repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10013 all species →	GENERAL VESICULAR TRANSPORT FACTOR P115	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005795 all species →	Cellular Component	Golgi stack	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0012507 all species →	Cellular Component	ER to Golgi transport vesicle membrane	Interproscan
GO:0045056 all species →	Biological Process	transcytosis	Interproscan
GO:0048211 all species →	Biological Process	Golgi vesicle docking	Interproscan
GO:0061025 all species →	Biological Process	membrane fusion	Interproscan
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0000139 all species →	Cellular Component	Golgi membrane	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0048280 all species →	Biological Process	vesicle fusion with Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20361	USO1; intracellular protein transport protein USO1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.