Gene detail

Detailed information of TcoG017617.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000909l:147782...165891
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TcoG017617.mRNA1

ATGTGTGCAGAAATAATGGACATCACCAGAGATGAATCAAAAAGAATTCTACGGAGGCTGGAGTTGGAAGCATATTCATCTATCATCAGTGCTTTCAGAGCCCAAGGAGAGTTAAGTCGGACTAAAAAGAAGATCTTGCAAGAACTGGGGACTCAGCTCAGTATATCCACTGAACGCCACAGAGCTGAAGTACGAAGGGCCTACAGTGATGACAGACTTGCTATTGTAGCTGAAAGTATTTATGGTGCTGGGAGCTGTGCTGAATGGGCAGCAGAAGGCAGAAGGCTTGTTCCATTGATGCCACGTCTTGTGCCACAAACAGTGTTCAGtgcttcagctactgcagctgctaattctgcggctgcagcAAATGCTAAGGTTCCAGCCTCTTCAGTTAATAAAGCAGGGAACAGTTCAAGTGCATTAAATGCCACAGCAAACTCTTCATCTTCTGCCAGTCTACAAAACAATTCTAAAGCTGCAACAGTGAAACAACAGTCTCAAACAGGTGTGGCACAAGGAAATGATACTGATGGCTTTGACGATGATGGCAAACCAAGGCGAAAGAGACGTTTAAGTGTATCAAGCCTGAACAAGCCAGTGACAAAAGTTACTATCCCTACCCCTACTCTGGTGTCAAAGCCGACAACTAAGCAGACCACCTCAGTGAGTACCATGACCAAGTCTGGTAAGGCTTTGGGACCTGCTGGCACAATTAAAGCTATTCCACGTGTCTCATCTCTCCCTGCTTCTGCATCTCAAGTGAAACTCCTTACTAAGACAGTTGCAGTTTCGCAGGCAATCTGTCAGGCCAAGACTGTGCTAAGTTACAAGACCATGACATCTGTTACATCATCACCTGCCAAAGCGCAAACTGTTATGACTCAGTCAACACCTAGGAATCAAACCAAAGTCGCCTCTGCAATCCCTCCAAAGGCAGTCTTAGCATCAAAGACTCCACTGTCATCTGCTGTCAAAAATGTTACCACTGGAGGAGCTTCAAGCCCAGCAGCTGCTGCAAATCCTATTGGAGTGGCTCTTAAAACCAGTTTAACAGCCGCCCAACTAGCGGCAAGACAAAAGGCTAAACCAGCAGCAACCAGATTTAAACCCCTTCCAGGAACTGTTAAGTTCAAGTCTGTCACGCCAGCTACCATGGGAACTTGTTCTACAGTTACCATGGTAACACCCAGTCCTAGTTCTCAGGCCTCCTCGGCCTTGGCAGCTACTGGCACACAACCTGTGGTTCGTGTTATCCATGTTCCAGGAACTGGAGGTGTTGGGGTGAGCAAGCCAGTGGTTGTCATGACAACAGGTCTTACCAAAACAACAGTTGCTGGTGTTGTGCCAGGAATAAGTAGTGCCAGTTTATCGAAGACAACTTCTCAGGTAACTCAAAACTCTTCAAGCAGCAAGACTACAGTTGCTACTACACTGTCATCCCAATCAAAAACCAAAGTCACTAACACAGTAACACAGGCTGCATCATCAGCATCCAAAACTGTTGTCATGACAACACTAGTGGGTGGAACAAAGAGAGTGGTACTCTCAGTCCCAGCTCCCTTACAGCCTGCTCCAGCTGTTTCCATCCCCACTGCCTCCTCTCAGGGAATAATACTTGCTAAAACACAAGGAGTTGGGCTGACATCCCCAGCTGTCACACAGTTAAATTCAAAGAAGGAAACCAAAGCAACTCCAGCCTTAACCACTGTGAGTCTTAAGCCATTTTCCACTCAAATCACACCCAGTCTGTCAGCTCCAACTGTCACCACACAGGTCAGATCCAGACCCCTTCCTGCCATTCTCCCTGCCCCTCCCAAACCATCAAGTGTAACACAGGCACCTACCAATGTCTCCACTACTGCGAGTGTCAGAAAACTTCCTACCATTTTACCAGCACCAGCAAAGAATGTCGCTGTCATTCCAACTGTCCTAGTTCCCATGGCTACTGGTATAGGTTCACACGCCGGAGCTCAACTACATTCATCAGTGCCACTGGCTGTAAATTCCACTGTCTCTAGCATAGGGGTAGCGGGCTTAAGTAAAGTTGGAGTGCAGCAGTTTCCATCAGTAGTTTCAGATACTGGTTTGGCTACCACTGATCAGGGTAGCCGGGCTTCAGAGAATTCTGCATCATCAGAAGTGTCTGGCTCAAAATTATCTGCGCTTAATGAGCCGAGTAGCACAGCTGAATGTGATAATAACACATCATCTGAAGATGATTCTCTACTTATGTGCTCGGAAACAATCGACAGCGGCTGCAGCATCACTGAGGCACCATCTGCTATGGATTTTTTTACGGGTGTAGCTGAAAGCACACCCATTAAAGACCAAGCTAAAAATGACACAGCTGAAACAGCAGAAACAGGGTTCAACTTGACCGAGGAACAAGAAGCGGTAGATGAAACCGTTTTAGATCCATTAACTTTACAAGATATTGAAGTATCTGTCTCTGTTGAAGATACAGAAAATGTTGCAGTGCAAAAAAATTTGATCAGTGAAACAGAAGCTTGTGAAAAACATTCAGAAACAGTAACAGGATCAATTGAAAATGTCACGGTTCAGAGATTGGATATTTCTGGAGAAATGTCTGATCTAGTAGGTGATTTGTCTGAGCATATTTACTCTGAATCACATATCGCTGATCTTGTAGAAGGGAAAGGACACAAAGAGGATGAAGAGTCAGATTTTTGTTCATCATTGGGGGATTCTCATTGTGGTGTTAAAAATGTAAATGAAAAAGGTGCTGAGGGTGGGCTACCTGTGATGAATCCCATAGAAAATCCTGGGTTACCTGTGCATAATGCCCTACAAATAATCGAAAGCTTTGTGGAAAGCATGGAAGCAAGCTCAGGAGGCAAATCAGAAGAAACTCAACTATCATCCAATAATTTGTCACCAGGATTCATGGAATCATCTATTTTGGAAAGTTCAGCGCTGCCTGAAGTACCAATACCAATTTCAGAGGAAGGTAATGTAATCAGCGAAGAACTCACAGTTGCAGCAGAAACTGCAGACAAAAGCCTTGGTGAAGGTCAAAATTCAAACATTTCAACAAGATTTGAAGAAGAAGGATGGGACATTTCTGATACACCAATTGATGTCTTGTCTACTTCCACAAGCAGTTCAAACAGTGTAACAGAAAGCGTGGAACTGACAGAGAAGGAAATTAGAGCTCTTGAAGCCTTTGGTAATATTAGAACAAGTGGAAGGAAAAGGAAACCTCCAACATCACTTGATGTGTCACCACCAAGGCAAGTCAGTGGCTGGGTTCGTGGTGCCCTCAGCTTGTTACAAAAAGTTGCCAGTTACCGTGGGCAAGGAAGACGGAAGGGCGACATCGGTGCTGCTTCCTGGTTCCTTAAACCAGTTGATCCAGTAGATGCACCAGGCTACTATAAAGTTATTAAAACTCCAATGGATTTTGGAACCATTAGAGTTAAACTGGAGACTGGGAAGTATCAAGAGTATATGGAATTTCATGCAGACATGTTGTTGGTAAAAACAAACTGTTTAAAGTACAACCCACCAGGACATGATGTACGACAGGATTGTGAGGAAGTCTTCAGATTCTATGAAACTGAGTATGGAAAAATGTTGGAGAGATGGGAAAAGTGCCATGTTTCTCCTGCAAAGAAGCCAAGAGTTGCATCAAAATCTGAGTCCTCCACATAA

Transcript

TcoG017617.mRNA1

GTAGGAGAAATCAATATGGCGGACGGTCTGCCCTTCGCGATTGTTAAAGAAAGTTACGCCTTTTTCTGAAGAGAGGACCAAGATGTTATAAGTCATTATGTGTGCAGAAATAATGGACATCACCAGAGATGAATCAAAAAGAATTCTACGGAGGCTGGAGTTGGAAGCATATTCATCTATCATCAGTGCTTTCAGAGCCCAAGGAGAGTTAAGTCGGACTAAAAAGAAGATCTTGCAAGAACTGGGGACTCAGCTCAGTATATCCACTGAACGCCACAGAGCTGAAGTACGAAGGGCCTACAGTGATGACAGACTTGCTATTGTAGCTGAAAGTATTTATGGTGCTGGGAGCTGTGCTGAATGGGCAGCAGAAGGCAGAAGGCTTGTTCCATTGATGCCACGTCTTGTGCCACAAACAGTGTTCAGtgcttcagctactgcagctgctaattctgcggctgcagcAAATGCTAAGGTTCCAGCCTCTTCAGTTAATAAAGCAGGGAACAGTTCAAGTGCATTAAATGCCACAGCAAACTCTTCATCTTCTGCCAGTCTACAAAACAATTCTAAAGCTGCAACAGTGAAACAACAGTCTCAAACAGGTGTGGCACAAGGAAATGATACTGATGGCTTTGACGATGATGGCAAACCAAGGCGAAAGAGACGTTTAAGTGTATCAAGCCTGAACAAGCCAGTGACAAAAGTTACTATCCCTACCCCTACTCTGGTGTCAAAGCCGACAACTAAGCAGACCACCTCAGTGAGTACCATGACCAAGTCTGGTAAGGCTTTGGGACCTGCTGGCACAATTAAAGCTATTCCACGTGTCTCATCTCTCCCTGCTTCTGCATCTCAAGTGAAACTCCTTACTAAGACAGTTGCAGTTTCGCAGGCAATCTGTCAGGCCAAGACTGTGCTAAGTTACAAGACCATGACATCTGTTACATCATCACCTGCCAAAGCGCAAACTGTTATGACTCAGTCAACACCTAGGAATCAAACCAAAGTCGCCTCTGCAATCCCTCCAAAGGCAGTCTTAGCATCAAAGACTCCACTGTCATCTGCTGTCAAAAATGTTACCACTGGAGGAGCTTCAAGCCCAGCAGCTGCTGCAAATCCTATTGGAGTGGCTCTTAAAACCAGTTTAACAGCCGCCCAACTAGCGGCAAGACAAAAGGCTAAACCAGCAGCAACCAGATTTAAACCCCTTCCAGGAACTGTTAAGTTCAAGTCTGTCACGCCAGCTACCATGGGAACTTGTTCTACAGTTACCATGGTAACACCCAGTCCTAGTTCTCAGGCCTCCTCGGCCTTGGCAGCTACTGGCACACAACCTGTGGTTCGTGTTATCCATGTTCCAGGAACTGGAGGTGTTGGGGTGAGCAAGCCAGTGGTTGTCATGACAACAGGTCTTACCAAAACAACAGTTGCTGGTGTTGTGCCAGGAATAAGTAGTGCCAGTTTATCGAAGACAACTTCTCAGGTAACTCAAAACTCTTCAAGCAGCAAGACTACAGTTGCTACTACACTGTCATCCCAATCAAAAACCAAAGTCACTAACACAGTAACACAGGCTGCATCATCAGCATCCAAAACTGTTGTCATGACAACACTAGTGGGTGGAACAAAGAGAGTGGTACTCTCAGTCCCAGCTCCCTTACAGCCTGCTCCAGCTGTTTCCATCCCCACTGCCTCCTCTCAGGGAATAATACTTGCTAAAACACAAGGAGTTGGGCTGACATCCCCAGCTGTCACACAGTTAAATTCAAAGAAGGAAACCAAAGCAACTCCAGCCTTAACCACTGTGAGTCTTAAGCCATTTTCCACTCAAATCACACCCAGTCTGTCAGCTCCAACTGTCACCACACAGGTCAGATCCAGACCCCTTCCTGCCATTCTCCCTGCCCCTCCCAAACCATCAAGTGTAACACAGGCACCTACCAATGTCTCCACTACTGCGAGTGTCAGAAAACTTCCTACCATTTTACCAGCACCAGCAAAGAATGTCGCTGTCATTCCAACTGTCCTAGTTCCCATGGCTACTGGTATAGGTTCACACGCCGGAGCTCAACTACATTCATCAGTGCCACTGGCTGTAAATTCCACTGTCTCTAGCATAGGGGTAGCGGGCTTAAGTAAAGTTGGAGTGCAGCAGTTTCCATCAGTAGTTTCAGATACTGGTTTGGCTACCACTGATCAGGGTAGCCGGGCTTCAGAGAATTCTGCATCATCAGAAGTGTCTGGCTCAAAATTATCTGCGCTTAATGAGCCGAGTAGCACAGCTGAATGTGATAATAACACATCATCTGAAGATGATTCTCTACTTATGTGCTCGGAAACAATCGACAGCGGCTGCAGCATCACTGAGGCACCATCTGCTATGGATTTTTTTACGGGTGTAGCTGAAAGCACACCCATTAAAGACCAAGCTAAAAATGACACAGCTGAAACAGCAGAAACAGGGTTCAACTTGACCGAGGAACAAGAAGCGGTAGATGAAACCGTTTTAGATCCATTAACTTTACAAGATATTGAAGTATCTGTCTCTGTTGAAGATACAGAAAATGTTGCAGTGCAAAAAAATTTGATCAGTGAAACAGAAGCTTGTGAAAAACATTCAGAAACAGTAACAGGATCAATTGAAAATGTCACGGTTCAGAGATTGGATATTTCTGGAGAAATGTCTGATCTAGTAGGTGATTTGTCTGAGCATATTTACTCTGAATCACATATCGCTGATCTTGTAGAAGGGAAAGGACACAAAGAGGATGAAGAGTCAGATTTTTGTTCATCATTGGGGGATTCTCATTGTGGTGTTAAAAATGTAAATGAAAAAGGTGCTGAGGGTGGGCTACCTGTGATGAATCCCATAGAAAATCCTGGGTTACCTGTGCATAATGCCCTACAAATAATCGAAAGCTTTGTGGAAAGCATGGAAGCAAGCTCAGGAGGCAAATCAGAAGAAACTCAACTATCATCCAATAATTTGTCACCAGGATTCATGGAATCATCTATTTTGGAAAGTTCAGCGCTGCCTGAAGTACCAATACCAATTTCAGAGGAAGGTAATGTAATCAGCGAAGAACTCACAGTTGCAGCAGAAACTGCAGACAAAAGCCTTGGTGAAGGTCAAAATTCAAACATTTCAACAAGATTTGAAGAAGAAGGATGGGACATTTCTGATACACCAATTGATGTCTTGTCTACTTCCACAAGCAGTTCAAACAGTGTAACAGAAAGCGTGGAACTGACAGAGAAGGAAATTAGAGCTCTTGAAGCCTTTGGTAATATTAGAACAAGTGGAAGGAAAAGGAAACCTCCAACATCACTTGATGTGTCACCACCAAGGCAAGTCAGTGGCTGGGTTCGTGGTGCCCTCAGCTTGTTACAAAAAGTTGCCAGTTACCGTGGGCAAGGAAGACGGAAGGGCGACATCGGTGCTGCTTCCTGGTTCCTTAAACCAGTTGATCCAGTAGATGCACCAGGCTACTATAAAGTTATTAAAACTCCAATGGATTTTGGAACCATTAGAGTTAAACTGGAGACTGGGAAGTATCAAGAGTATATGGAATTTCATGCAGACATGTTGTTGGTAAAAACAAACTGTTTAAAGTACAACCCACCAGGACATGATGTACGACAGGATTGTGAGGAAGTCTTCAGATTCTATGAAACTGAGTATGGAAAAATGTTGGAGAGATGGGAAAAGTGCCATGTTTCTCCTGCAAAGAAGCCAAGAGTTGCATCAAAATCTGAGTCCTCCACATAAAGAAATAGTAAAAAAGAAAATGATGTTTGTACATGTTTTGAAGCATTATACTTGGTTTTACTATTTTAGCAGAGTTAGGAATACTGTAAGGACAGATTGTGAAAGAAAACATGAAGTATTTTGTACATAATGTACAGTAGTCATAGTTAATTATAttaaccctttaagcccttaacatcaaaatgtaaattctcatttctagtcctatacatttcctatagaagtagtggggagaaattgtttggatatcaaga

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00439 all species →	Bromodomain	Bromodomain	Domain	Interproscan
PF03735 all species →	ENT	ENT domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001487 all species →	Domain	Bromodomain	Interproscan
IPR033482 all species →	Family	BRCA2-interacting transcriptional repressor EMSY	Interproscan
IPR036142 all species →	Homologous_superfamily	ENT domain-like superfamily	Interproscan
IPR005491 all species →	Domain	ENT domain	Interproscan
IPR036427 all species →	Homologous_superfamily	Bromodomain-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16500 all species →	BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25790	EMSY; BRCA2-interacting transcriptional repressor EMSY	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.