Gene detail

Detailed information of TcoG018874.mRNA1 in Tubastraea coccinea

Genomic Location: ptg000983l:842366...847953
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG018874.mRNA1

AGTATTAAAATCCAAGATGGCGTCCTACTCGATTAGATTCAACAATTTTGAATAGATCTGCGACAGTTTCATCGAATGTTGCAGTGCCAATCTTCAGTTGTAGACCAATGAAGTATCTGTTTAATATTTTTTTCAATTCAAAATGAACGCTCAAGGAGCAAATACAATAACAAAGGATTCTATTCGTCAACGTATATGGGACCATATAGAACGGAATGATCTTGCCAACTTTCCGCGACCTGTTCACCATCGAATCCCAAATTTTAAGGGAGCAAACGCGGCAGGAGAGAAAGTTGTTGCTATGGATACATTCAAAAACGCCAAAACTGTAAAAGTTAACCCAGACAAACCCCAAGAATTTGTGAGATATAAGACATTGGAGGAAAGAAAAGTGTTGTTGGTTCCCACGCCGAGGTTAAAGAATGGTTTGTTCAATCGTATTCTTCCCCCTCCTGGTGCTAACACTTCTATGCTTAAGAGGTGTGCCACTAGGGAAGGGATTACAAATTACAGCTCTCCTGTTGGGCTGGATCATAAGATCAACATTGATCTTATTGTGATTGGGTCTGTGGCAGTGTCATCAAAAGgatatcggattggtaagggagaggggtatgctgatatggaatatgcaatgatggTTACCATGGGAGCTGTCAATCAAGACACTGTTGTCATCACAACTGTCCATGAATGTCAAGTTGTGGATATCCCAGATGAACTGACAGATGAACATGATCTGATGGTTGATTACATTGTAACCCCTACAAGAATAATAAGCTGTGACGAGACCAGACAGAGGCCGACCGGGATACAGTGGTCAAAGATCACACCACAAATGTTAAAAGAAATCCCCATCTTAAAAGATCTTAGAGAAAAAGAGAGAAGGCTTGGAAGGGATGTCTCTTTAAAAGGATAGTAATGCCTTTAAAAGGTCACAATAAAATTACATTCTATTTTTTATTATACTCACTGAGCCATGGACCTTGGAAAGTCACACTTTGATCAAACACAGTCCTGCCAATATCATTTcacaagtgaaatttgtgaacctcgcagtgtgctctcaacttaagcagttgaaaaagcaacctgaaaaaaatccaagcttgaatgggatttgaacccatgtttatccgcagttcaaatatattattttcatatattcacattcaAATATCATTTCAGCAAGAAGAACAGAATCCAGGCACACAAGTTATACAATAAACATCTTTATTGAGTTCCACACATGGCTGACACAATTGTTTCACACTGCAGACTTGCTACAAATTAGTAACCATTGATCACACTCTCTTTTCCCCAGAGCAAAACTACAGATGAAAGAAAAGGTTTCAAGGCCAGAAGAAAAAAATTTCTTTTATTCCTTGGAGGGGGCAGGGATGCACATAAAGGAAAAGGAATGTCTGTTACAAGTTACAAAATTCATATTAAAAAAGTTTGAATTTAAAGTATTTTACATAGTATAACACCACAGCTGTTTGGTTGTCTTATACTGTGGCAATGACATGACTGAATGAAATGTAGATAGGACTGCTTAGTACAGTGAGTGCACACTTATTTTTtttccctttcccagtttagtcggtcaagcgagaaacgaaaaaacgcggccattatctgttcactaatgttttttcgtttctgctcgatggactaagctgggaaagagtgactgctcgtagtctaATTGACACTGAAAACTCAAATTTACGAAAAAGTTAAATAAAAGTTATCATTTTGAAGGTCAGAATGTGTTCCAACTCTACTTGAACTAGCTGTACATGAATAGACCTCTTAATATTGTAGGCAAACTTTCAAGGAGCAGTTGATTCATGTGGTGTTAAATAATGTTGTGGTTCAAATTTTTTTTTGCAGTTTAAGTTTTGTTTTTCTTTGTCCCAGATCTAAAACAATGGAGAATAAAAATTAAACTGAGAAAATTTTTAACCACAACTTAACACAAAATTAATATAAGGAAGTGTTTGCAAGAAGGTCCTCTAACACCCAGTTCACTTGATAACTACTGATAGCTAACCATTCCCCACAATGTTGCTGATAAGCAACATAGTCATTCTCACACAACGTACGACAAAAGGCCTAATGTATAGCACCCACgagggggactcccatctaaaaatgatgggggtgctcgttgtaccttttaggggtaaaagtttgtggattggtaccacttaggacgctaaaatctaaaatgaccaccattagaattattgctgtaactttaaggatatgagccgaaaaaataggacagattaggacatgttttggaattggtacctcttgggggtaaaacttattttgagccatgcccatcaaatgagattctggtaccttttagggtgttttttgaaaatttctgacgagcacccccgtcatttgtatatgggagttcccctggggtatagcagttctaacttta

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01812 all species →	5-FTHF_cyc-lig	5-formyltetrahydrofolate cyclo-ligase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024185 all species →	Homologous_superfamily	5-formyltetrahydrofolate cyclo-ligase-like domain superfamily	Interproscan
IPR002698 all species →	Family	5-formyltetrahydrofolate cyclo-ligase	Interproscan
IPR037171 all species →	Homologous_superfamily	NagB/RpiA transferase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13017 all species →	5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01934	MTHFS; 5-formyltetrahydrofolate cyclo-ligase	EC:6.3.3.2	One carbon pool by folate	ko00670	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.