Gene detail

Detailed information of TcoG022183.mRNA1 in Tubastraea coccinea

Genomic Location: ptg001310l:107119...117615
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

TcoG022183.mRNA1

ATGGCGGGTAAAAAGGGCATTCGAGATCTCTCTGATTTCGAGTTAATGAGCGAACTCAAGTCTTTAGGTTTGACAGTTGGACCGATTAGCCCAACTACCAGACGAATATATGAAAAAAGGCTCTTTAAAGCCCGTGGCTGTGATGTCGTTGACAGTACTCTCGAAAATCAAGATGCACGTGCAAATGTTGGTGAGAGTGTGAGTACAAATTTGAACAATTCCATCATTAATAGTACAAATCGTACTTCATCAGAGGCTTTGGAAAGCCCTGCGGTATTTTATGGTGTCTGTTTTGATGTGGTTCGTTCGTCGTCAGAAAGTGGATTACCAAGTGTCCCGGCCGTGTTTACAAGCAAAGAGGAAGCACTAAAAACAGCAAAGAAATTCAAAGGTGCTCGCTTCAAAGGGTTCAAGAACAGAGATGAAGCTGAAAGTTTTTCCCGATCACGATCAAAGGAACAGGAAAATTCTCCTGCTGTAACGAGTTCTTTGTCCGCTCCTGCAGATCCTGTCAGCAAATTTAAAGGCCCAACCCCGCAGGAGTTGGTCAAATTTCGTAAAATTATAGAAAACGGTTCAAGAGATGAATTTCTTGAGGTGGCATTGAAAAATCCTAGATACTTAATAGGGCCCGGTGATACTCCAGTGATCTTACAAGAAGGATTCAGGTATAACGCCCTTCATGTGGCTGTAAAAAATAACAGAAAGGAGATGTGTCAGTTGATTATCGATACTTTGGAAAGTGAACACTTTTGGAACATTCTTTTAAATGAAGAGACTCAGTCAGTGATGAACAGCCAAAGGAAGCAGTTTTTAGTTGATATGTACTTGAATACTCCAGACAAGGGGAACTGGGAAACTCCGTTGCATTTTGCATGTAAATTTGGTTATGCTGATGTAGTGGAATATCTAGTGTCTCATCCTTTAACTGACACCCAGAGAGCAAACAAGTATGGAGAAACTCCAACACAGGTGATCTGTTCCAGATGCACTTCTCCAAGTTATGAGTTGAAAAGTCAAATAAGAAGCTTCATTGAGGGTAAAGACAGAAATGTAAAATGCCTGTTTGAAGCAAGAATGTCTATGGACTGCTTTTTTGTTCCACTCATGGGCTCAGTGGACAATGCTACCCCTCCCTGGATAGAAGGCCCTTGGTCACCAGAAGTCACTGATGAAAAAAATTCCCGGGAGCCTGGAACACAAGGAAGCCCACTTGGTAACAGCATGAAACAAAAGAACAGTCCTGGTGAAATGCCAATCACGGTCAGGGCATATGCAGGGCCAATGTCTCCCTCAAAGGCTGAAGAATTCTACCTTTCATGGAAGACTCCACCCAAGCTAGAACAGCGTAACAGCTACATTCAGATAAAGAGAAAAGATGACAGTCGTGGTGTAGAGAGGATTGGAAGGGAGCTTGCTCATAATGGAAACATCCCTTGGATGGAGTACTGGAATTTTCTTGGCTGCTATGCAGACTTGTCAAGGACCCAAGGTCTTGAAAAACTAGAAGTCTATCTGACCAAGAAAAAAGACAGCATTTTGTCAAGCAGACTATCAGTGACGCCCCAAAGAGTGAGACATATTAAGAGCACTAGCAGTGCTGTCCTTAAAACCCCTGAATCAAGGCAGAGCAGTGTTATTTTGAGTGATGATGGTTTGCTGAGTCAAACAAGAAATACAAGTGGTAATAACCATTGCGATGAAGCTGTTGCCATGGATTTCGTTGAGGGTCATCACTCAATATCCAGGAAAATTTGCTTTTTGGATTTGGAGATGGAAACAGATAGTGCAGATGTGGAAGTGAAGAAAGACAAACCATGGGTTTCAAAACAACAGAATGTCATGAAAAATCTCTCAACTCAATCTCCAGACATCAAGTCAGATGAACCTATAGTGAAGGCATTGGCAGAATCTCTAGATGCGCTTTCACTGCATAAAGAAAAAGCTGTAGCAGAGACAATGCATGATGCATTGTTACCTGAAGATCCAGGCAAAGAAGATGAACTAAATGAGAGTAGTTACTCTGTGGAAAGAAGCACAGTAAAAGATGATGTGGATAATGCTGGGGTTCTGCCATGCAAGAAAAAGTTGTCGTACCACTCACCAGAAAATAAAAGTGAGCTGTTAGACATTAACGACGGAAATCTACCTGATGTTATTTCCATGGCAACAGATAGAGAAGTCATGGTCAACTTAGGGGAGGACAAAACACATGTTGAGGAGAATTGTAAAAGATCTGCCATCTTGGAAAATGTCAGAAATGAAAACCTGTTATCGTCATCAAAATTTTATGACGATGAAGTGTTTGAGAACAACACAGGAAATGATGTTGTTAGATCTGTTGAGGAAGATTGCACCAGTTTTGGTCATGTTGGACATCAGGACTTCAAAGTTCCTGAAATCAGAAATGTTAGGCATGGCAAGGGTACAGACAGCAGTAGCCATGTTCCTGTCTCAGGAAATGCTATCAGTATTTTCATTCAGGGAATGCAGCCTAGTAAACTGGACCTTGATGTACTTATAGCCATTGGTCAGGTGAACATTAACTCAAGGAAATATCCTAATATAACACAGTGGAAGAAACTTGTCACATCATTTTCTGAGGAAAATCAACAAAGCTGGCCAAGTCCTGGATCGCCAAGGTTCCACACAAGACACAAGTCTCTCATGTGGAGTTGCTAA

Transcript

TcoG022183.mRNA1

ATAACATCCATCCAAACAAAATGGCGGGTAAAAAGGGCATTCGAGATCTCTCTGATTTCGAGTTAATGAGCGAACTCAAGTCTTTAGGTTTGACAGTTGGACCGATTAGCCCAACTACCAGACGAATATATGAAAAAAGGCTCTTTAAAGCCCGTGGCTGTGATGTCGTTGACAGTACTCTCGAAAATCAAGATGCACGTGCAAATGTTGGTGAGAGTGTGAGTACAAATTTGAACAATTCCATCATTAATAGTACAAATCGTACTTCATCAGAGGCTTTGGAAAGCCCTGCGGTATTTTATGGTGTCTGTTTTGATGTGGTTCGTTCGTCGTCAGAAAGTGGATTACCAAGTGTCCCGGCCGTGTTTACAAGCAAAGAGGAAGCACTAAAAACAGCAAAGAAATTCAAAGGTGCTCGCTTCAAAGGGTTCAAGAACAGAGATGAAGCTGAAAGTTTTTCCCGATCACGATCAAAGGAACAGGAAAATTCTCCTGCTGTAACGAGTTCTTTGTCCGCTCCTGCAGATCCTGTCAGCAAATTTAAAGGCCCAACCCCGCAGGAGTTGGTCAAATTTCGTAAAATTATAGAAAACGGTTCAAGAGATGAATTTCTTGAGGTGGCATTGAAAAATCCTAGATACTTAATAGGGCCCGGTGATACTCCAGTGATCTTACAAGAAGGATTCAGGTATAACGCCCTTCATGTGGCTGTAAAAAATAACAGAAAGGAGATGTGTCAGTTGATTATCGATACTTTGGAAAGTGAACACTTTTGGAACATTCTTTTAAATGAAGAGACTCAGTCAGTGATGAACAGCCAAAGGAAGCAGTTTTTAGTTGATATGTACTTGAATACTCCAGACAAGGGGAACTGGGAAACTCCGTTGCATTTTGCATGTAAATTTGGTTATGCTGATGTAGTGGAATATCTAGTGTCTCATCCTTTAACTGACACCCAGAGAGCAAACAAGTATGGAGAAACTCCAACACAGGTGATCTGTTCCAGATGCACTTCTCCAAGTTATGAGTTGAAAAGTCAAATAAGAAGCTTCATTGAGGGTAAAGACAGAAATGTAAAATGCCTGTTTGAAGCAAGAATGTCTATGGACTGCTTTTTTGTTCCACTCATGGGCTCAGTGGACAATGCTACCCCTCCCTGGATAGAAGGCCCTTGGTCACCAGAAGTCACTGATGAAAAAAATTCCCGGGAGCCTGGAACACAAGGAAGCCCACTTGGTAACAGCATGAAACAAAAGAACAGTCCTGGTGAAATGCCAATCACGGTCAGGGCATATGCAGGGCCAATGTCTCCCTCAAAGGCTGAAGAATTCTACCTTTCATGGAAGACTCCACCCAAGCTAGAACAGCGTAACAGCTACATTCAGATAAAGAGAAAAGATGACAGTCGTGGTGTAGAGAGGATTGGAAGGGAGCTTGCTCATAATGGAAACATCCCTTGGATGGAGTACTGGAATTTTCTTGGCTGCTATGCAGACTTGTCAAGGACCCAAGGTCTTGAAAAACTAGAAGTCTATCTGACCAAGAAAAAAGACAGCATTTTGTCAAGCAGACTATCAGTGACGCCCCAAAGAGTGAGACATATTAAGAGCACTAGCAGTGCTGTCCTTAAAACCCCTGAATCAAGGCAGAGCAGTGTTATTTTGAGTGATGATGGTTTGCTGAGTCAAACAAGAAATACAAGTGGTAATAACCATTGCGATGAAGCTGTTGCCATGGATTTCGTTGAGGGTCATCACTCAATATCCAGGAAAATTTGCTTTTTGGATTTGGAGATGGAAACAGATAGTGCAGATGTGGAAGTGAAGAAAGACAAACCATGGGTTTCAAAACAACAGAATGTCATGAAAAATCTCTCAACTCAATCTCCAGACATCAAGTCAGATGAACCTATAGTGAAGGCATTGGCAGAATCTCTAGATGCGCTTTCACTGCATAAAGAAAAAGCTGTAGCAGAGACAATGCATGATGCATTGTTACCTGAAGATCCAGGCAAAGAAGATGAACTAAATGAGAGTAGTTACTCTGTGGAAAGAAGCACAGTAAAAGATGATGTGGATAATGCTGGGGTTCTGCCATGCAAGAAAAAGTTGTCGTACCACTCACCAGAAAATAAAAGTGAGCTGTTAGACATTAACGACGGAAATCTACCTGATGTTATTTCCATGGCAACAGATAGAGAAGTCATGGTCAACTTAGGGGAGGACAAAACACATGTTGAGGAGAATTGTAAAAGATCTGCCATCTTGGAAAATGTCAGAAATGAAAACCTGTTATCGTCATCAAAATTTTATGACGATGAAGTGTTTGAGAACAACACAGGAAATGATGTTGTTAGATCTGTTGAGGAAGATTGCACCAGTTTTGGTCATGTTGGACATCAGGACTTCAAAGTTCCTGAAATCAGAAATGTTAGGCATGGCAAGGGTACAGACAGCAGTAGCCATGTTCCTGTCTCAGGAAATGCTATCAGTATTTTCATTCAGGGAATGCAGCCTAGTAAACTGGACCTTGATGTACTTATAGCCATTGGTCAGGTGAACATTAACTCAAGGAAATATCCTAATATAACACAGTGGAAGAAACTTGTCACATCATTTTCTGAGGAAAATCAACAAAGCTGGCCAAGTCCTGGATCGCCAAGGTTCCACACAAGACACAAGTCTCTCATGTGGAGTTGCTAA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03020 all species →	LEM	LEM domain	Domain	Interproscan
PF01693 all species →	Cauli_VI	Caulimovirus viroplasmin	Family	Interproscan
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011015 all species →	Homologous_superfamily	LEM/LEM-like domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR003887 all species →	Domain	LEM domain	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR051108 all species →	Family	DHHC palmitoyltransferase	Interproscan
IPR011320 all species →	Domain	Ribonuclease H1, N-terminal	Interproscan
IPR037056 all species →	Homologous_superfamily	Ribonuclease H1, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12349 all species →	ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0035307 all species →	Biological Process	obsolete positive regulation of protein dephosphorylation	Interproscan
GO:0042326 all species →	Biological Process	negative regulation of phosphorylation	Interproscan
GO:0051721 all species →	Molecular Function	protein phosphatase 2A binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21412	ANKLE2, LEM4; ankyrin repeat and LEM domain-containing protein 2	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.