Gene detail

Detailed information of TcoG022480.mRNA1 in Tubastraea coccinea

Genomic Location: ptg001326l:2676007...2704042
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05160 all species →	DSS1_SEM1	DSS1/SEM1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007834 all species →	Family	DSS1/SEM1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16771 all species →	26 PROTEASOME COMPLEX SUBUNIT DSS1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0008541 all species →	Cellular Component	proteasome regulatory particle, lid subcomplex	Interproscan
GO:0043248 all species →	Biological Process	proteasome assembly	Interproscan
GO:0000502 all species →	Cellular Component	proteasome complex	Interproscan
GO:0000724 all species →	Biological Process	double-strand break repair via homologous recombination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10881	SHFM1, DSS1, RPN15; 26 proteasome complex subunit DSS1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.