Gene detail

Detailed information of TcoG024971.mRNA1 in Tubastraea coccinea

Genomic Location: ptg001566l:962060...973106
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG024971.mRNA1

ATGAGGGAATTTGAACTTCAGAGCTTGAAATCTCTGAGATCTGTTCCTCTAATCTGTATAAAAATTACTAGTTCGTCAGGCAAAGAAAGCAGTCTAACAGTTTGTTTAAGAGATACTGTTAACGCGGTGAAGGTTAAGGCTCTCGGTGGCGAATATTCGAAGGAATCTCCGTTTTACAGACTCGTACTCGCTAAATCAAATCGCGAACTCGATGACGAGAAAACACTAGAAGACGAAAATGTTCAAGAAAATGACGAATTAATTCTCTTCAAAAAACGTCACAGCACAAGTGCCGATATCGCCGAAAAAGAATGTAAAAGTAACAGTTACCAAGTACCTGACCTCAAAGTAGTCAAGAAACTTACAGCTAAACTAGAGGCAGGGAAGGTCAAGGAACATTCAGCCAGCTTGTCTCCATTAGCTTTAGATTTCAATTCCGAACTTAGAAGAATTCTTATCTCCCTGATTGATTCTTCCGTCCTTCTTCAATCTGCGAATGAAGACAAAGAAAGTGAAAGTTCAGGTCAGGAAGAAGATTTACAACCAAATGTTGACCATGCCATTCTAAAACAGCTGACAGACATGGGTTTCAAAGAAACCAGAGCTAAGAAAGCTTTGGTTTTAAACAGGATGTCTCCCATGCTGGCTATGGAGTGGCTCTTGCAACATGAAGGTGATGCTGACATCGATGAACCTTTAGTGATTGGAACAAGGGCTGGTAAGACTCGCAGGAAAAGAAAAGAGTTTGTTCCAAATCCTAGGGCTGTGAATAACTTGAAAGAAATGGGTTTTCAAGAGGAAGAGATTCTTTTGGCACTTAAAGCAACTGGGAATAACCAAGAAGCTGCCTGTGATTGGTTGTTGGGTGACAGACAAGGTAGCATAGAAGACATCAATCAAGGTCTAGACCAGTCAAGTCCATTGTATCAGGCAATTATGGAGAACCCTTTAGTTCAACTCAGCCTTAATAATGCCCGAGTCCTTGGAGCATTTGAGGACATGCTCGAAAATCCATCCTCAAGTTCATTCTATATAAACGACCCAGAAACTGGACCAGTGTTACTTCAAGTCTCTCGGATAGTGCAAGGATTTGCCAGATGATAGTAAATTAGGCACTGTAAACTGTACATATTTTTAAATAAGCACAAATCTAGTGTTTTCTTCACTCTTTACTGCTAGCACCCTTTGCAGTAGTGTTTATTCTTGTCACATAATTCCAGAAAGAAATATTGTGTGACAAGTTAAAAGAACCACTGCAAAGGGGTACTATCAAGGAATGTTGGTCAGTGATGTTGCTTGGCAGCGTAGCTTATTTTTATTGGGGTGGCTCATGTGGTATTCTGTTTTCTGACTGGAATTATACGGATTTGAAATCCTTgaggagaggaggaggaaagaggaggGCCACCCTTCTTGTCGCTCTTTTCACCCTGTACCTAACTAGAGAACATGTTCATAGTTTCTTTACCTCACTTTTTCTTTTGGCCTTGGGATGCTGTAGTGACAAGCCAGCAACAAAAGAATGCTGGTGGTAAATAACAAGTAGTACTTTGTTATATTTTACCATTTTGAAGGTTTAAACTGATTGTGTTTTTTTTATTTTCTTAAAAAAAAAAACATTTTGCTATCAATATTATTGTAAATGTAGAAAAGGTAGAGCAAATCTTGAGATGCTGGTAAAATAGGTAAGCTATATGACATTGTCTAGTTCCTTTACTTGTTTCTTTTTTTGCCAGCCAAGCAAAGTGAGAGGAAACTATTTTTTTGTATTTAGAAATACAATATTTTTGGTTGGATCTATATAAAGTACATTGTGCTTAGAATTCGTTGTTATGTCTCaaagcggttttgagttgagtgtcgtaaaaccaaaactagtaattactctggccaatcataacagaggtaggcaatccagtgagccaatcaggactcaaagcaaatacgtgtagccggcgccaagcgcgggaaaacgcgttcgagcaagattggttgagaaagtggcgggagattttttagccaatcacaaagcgtagcaatgtaaaaccaca

Protein

Gene family

Family type	Membership / link
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00627 all species →	UBA	UBA/TS-N domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR015940 all species →	Domain	Ubiquitin-associated domain	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR041926 all species →	Domain	UBAC1, UBA domain 1	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR041927 all species →	Domain	UBAC1, UBA domain 2	Interproscan
IPR052476 all species →	Family	Ubiquitin-associated domain-containing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46738 all species →	UBIQUITIN-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12174	KPC2, UBAC1; Kip1 ubiquitination-promoting complex protein 2	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.