Gene detail

Detailed information of TcoG024998.mRNA1 in Tubastraea coccinea

Genomic Location: ptg001567l:266959...275764
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG024998.mRNA1

GACGCAAACTGCATATCGACCTCGTTTTTCACAGTATCATTATGAATTCTTCGCAAAAGAGGAAAGATGAGTCGTCGAACGCTGTATTAAAAAGCGCCAAGCAGCAAAAGACTGATTCCAGAAGCAAACTGTTGAATCAGTATTTTTTGGAAGAGGAATTCAAAGTTAAATTTGCGGACGCATTCAGGAATCGTGAGAGTTTTAATGAAGAAGGATCTGTGATACACACATCACCGTTTAAGTGCTGCCTTATTCCTAATTTCATCTCAGATGAGGAATATTTAAAAAGATTAGAAAAGGAACTTCTTCAACTCAAGTTCTTTGAAAAGTCAAATGACTTGTATAAATTCCACCAGAGCAATGACCTAAAAAAATCATCCAAGGCAGATATCATTTCTTTAAGGAGTGCTTTATATAACGACTTTAGGGTGTGGCTTCATGAGGTAACAGGGTTTACTGATCTCACTGATCAAGTGGACATGTCATGTGCTAAATATGAACATACCGATGTCCTCTTGTGCCATGATGATGAGCTTGAAGGAAGACGAATTGCTTACATATTTTATCTGGTTCCACCTGACTGGGAGAATAATGATGGAGGAACCCTTGATCTTTTTTCAACAGATGATCATGGCCAACCAGATCAAATAACAACATCTTTAGTTCCCCAGAGGAACTCACTGGTTTTCTTTGAAGTGACTCCTGTTTCTTTTCATCAGGTAGCTGAAGTGTTATCACTCAATAAAACACGACTTTCAGTCAGTGGATGGTTCCATGGTGACAACATTGCCAGACCTGTACCCTATCAAGAACCACACCCTAAATCACAAGCACCTTGTGCTATGGAGGATGAGATACTTGTGGACTGGGTGAACCCAATGTACCTTGATACAGGTGTGGTAAAAGACATCCGAGCAAGATTTAAAGATGAATCAGAAATACAGCTACAGGAATTTCTTGTGGATAAGAAATACCATGAAGTGGTTGAAGCATTGCGTGATAAAAACGTCGAATGGGAATGGAGAGGACCAGCTAATAAAAGACATTTCGAGCAAGCGGTCATGGAGACAGTCCCGTCGATTGTACAACAGCTGACCAAGTTGTTGCAGTCTCAACCAATGTTCAAATTACTGAGGACAATGACCGGACTAGAAATGGCTGACGTGCCCCTCAGCgatgatgaggacagtgatgacgatgaggatgacgaAAGAAGTAAGGATACCGATGAAAAGAAAGAGCGTGCTCCATGTTGCCATGGTGACATACGGCGCTGGGGACACGGGTGTTACACTTTGGTCCATGATACAGATCCTGAAGGAGCCGAGTTCGCTTTAGATGCTTTGTTATACGTCGGTGGAAAAGGTTGGAAAAGCGATTATGGTGGTTATACTACATATTTAACAAGCGGAGAAGATGAAGAGCTATTAACAGTCCACCCTCAGGAGAATTCCTTGGCGTTGGTTTACAGAGACAAAGAGACTACGAGATTTGTGAAGCACATAAACCATTCATCGCTGACTGATGTGGGACCAGCCGACAGAGACAACAACTTCTTCGACTTTTCCTTTGTTTATTTTGAATAGTGGCGAGAAAGTTCATGGTCAAGTAGCCCCCAAGTTAAACACGCTATAGCCCCCCACGCGCTTTTAGAAAGAGGAATATACATACACTTTTATTTGGGGGCTAAATGTCGGGCTTTGGAGCTAAATGACCAGTTACCGGAGAGTAGTTAGGAGAGTTCTCGCAAGGGAAATTCGCCCCAAGTTAGCCTTACCGAGTTCGCTTTCTACTGCCACCAAGTATACCCTCAACATAGAATAAGATGTAGAGAATCCAAGAGAATTGCAGGGAGTTTCACCCACGATATCGCACCACCAAGTTATTGAGTTCGCTTCCTACTTCTATTTAGTTCTTCCTCGCCATAAAGATGTTATAGATTTACTTAAGGGAGTAGCAGAGAGTTTGCTATCGACATGTTAGCCTGTGCCTTACTGAGGTTGTCAACATCCTGTTTCAGTTAAGTTCGCCTTCAACAAAAAATGAGTTATACAAGATTGTACCAGGGCCTTTCGCCTCTATAAACATTACACCAACGTGTCAATCCTTtactaactcaatcagaaaggacatgatcacccaatataaattttctcgatattttcacaacttctctccacttcagctataataaatctatgggtaaaagaagggagaaattgtcttttgatgatgtggagttaaaCTCTTTGAATGGACGTTGAGGCTGAGGTTTTGTTCACTTGTTTAACAGTAAACTATTGTAAATAAAAAACAAAGTagagcggtttt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13661 all species →	2OG-FeII_Oxy_4	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan
PF10637 all species →	Ofd1_CTDD	Oxoglutarate and iron-dependent oxygenase degradation C-term	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR051842 all species →	Family	Ribosomal subunit uS12 prolyl hydroxylase	Interproscan
IPR039558 all species →	Domain	Prolyl 3,4-dihydroxylase TPA1/OFD1, N-terminal domain	Interproscan
IPR006620 all species →	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan
IPR019601 all species →	Domain	Oxoglutarate/iron-dependent oxygenase, C-terminal degradation domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12117 all species →	HISTONE ACETYLTRANSFERASE COMPLEX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006449 all species →	Biological Process	regulation of translational termination	Interproscan
GO:0019511 all species →	Biological Process	peptidyl-proline hydroxylation	Interproscan
GO:0031543 all species →	Molecular Function	peptidyl-proline dioxygenase activity	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418 all species →	Molecular Function	L-ascorbic acid binding	Interproscan
GO:0016706 all species →	Molecular Function	2-oxoglutarate-dependent dioxygenase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24029	OGFOD1, TPA1; prolyl 3-hydroxylase /prolyl 3,4-dihydroxylase	EC:1.14.11.-	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.