Gene detail

Detailed information of TcoG026151.mRNA1 in Tubastraea coccinea

Genomic Location: ptg001684l:925090...931112
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG026151.mRNA1

CTTTTCTGATCGCTGCACCACGCGGTCAAACGACAACAAACGGACAGTGGTCAAACTTTACGATTTTTAGGTGATCAGTAGCTCTGTGTTAATGTCTTTTCGTGGCCGTGGAGGGGGCCGTGGGGGTGGACGAGGTGGCGGCCGTGGTGGCTTTCGTGGCGGTGGTCGGGGCGGTGGAAGAGGAGGTTTTCAGCAACGAGACTTTGGGCCTCCTGAATATGTTACAGAACTAGGCCATGTTCTTCACACTTGCGAGGGAGACCTGGTGTGTAAATGTACCAACGAGAAGATCCCATACTTCAATGCTCCAGTTTATCTAGAGAACAAATCACAGATTGGAAAAGTAGATGACATATTTGGTCCGATGACAGAATTTTACTTTTCAGTGAAGGTAAATACTGACATGAAAGCTGGATCGTTTAAAAAAGATCAAAAGTTCTTCATTGATCCAATGAAGTTGTTACCTTTGGCCAGATTTCTTCCCAAGCCTCCTGGACAGAAAGGGCCCCCAGGTGGTGTTGGTGGTAGAGGCAGAGGAGGCAGGGGTGGACGAGGAGGCGGACGTGGTGGAGGAAGAGGTGGTGGTGGCTTCCGTGGGGGTGGCAGAGGAGGAGGGGGGTTCCGAGGAGGTTCCAGAGGTGGTGGCAGAGGAGGCTTTAGAGgtggtggtggtggtggtggtTTTAGAGGTCGTGGGAGATGAACATCAAACTCTCTGTTGCCTTTTAATTTATCCACTGTACAGAATCATAGGAAGGCCTCAATAACCTCAGTGTGTTCCCAACATGTAACACAAATTACAAAGTTTTATTTCACTCTTGCAGTCAGAGTCACGGATCCATTCACCAAGTCGACTGTTTTAGTTTTATGTTTTGTGAAATTAAATTTTTTATTCAATAAAATGAAGCCTTTTTTCTTTGCTTATTAACTTACATTTACAGACATAGAAAGAGGTGATAGAAAATCAAATAGCCCAACTTCCAGAAAAATTGAGATGACCTCTGATAGTGGCAAGTGGCGCAAAGGAAAAGTTGCAACCGAAAACGAGCAGCCCTCTGTCACCACCCACAATTTTTTTAGCGTTGTTTTCCTTGCTACCCATTATATGAATGCCTGGATTGTTATAATACAAATGGAAAAGGTTGAGAAGGATTTAGGATCTTAAAAAAATATGGGCTAAACATTTCAAAATGTGCAGAGGAGAAATGACTCTTTCAGATCTTTCGTTTATCAATGCTTTTGTTGCTGTAGTCATTGCCATGGCTGGAAGGGTGGGGGCTGGGGGGGGATATAAAAGTGATGTGGGAGGGAGAGCCATGAAAATTAATATCGAAACAAAAGCTTTTCCCTAACCTTATTTTGTGGGTGACGCTTAAATTTTATTTCTCGTTCTTTATTCTCACAAGTTGTTCTTGACATTTTTTCTGGCCTAACTCTCTGAAAGATACTGGCAGTGCAATATACCGTGGTCGTATTACCTACTACCATGTTGTTTAAAAACACCTAAAAATGTTCCACAAAAACCCCTACAAGTTACAAATGAACTCCGATGTCACTTTTTGTTAGAATCCCAAACAAGCCCGCCCCTGGTACCGTTGTTTTCTTAACTTCCGTTTTATTACAATATTCACACTTTACGAATGTCCCCAAATCCTAAACACTGCTTGCTTTTACACAAGGTTATCTTCTAACAATGTCTTCATTCTTAAATGGCAGTGGTACCAGGTTGTAATCATGTCTAATACGGTTCTTTAAATCCCGCCATTGGTGCAGTGGCGCTGGTTTTGGCGGGATAAGTTCGCGATAGTATGTGCTACCAGTTGTGGTTTGACAAATGTCTGGAACCCAGAAAGCTTTACCCGCGTGTGTCGCGCGTGTCGCGGTTGCGGTGCGCGTATCCAAACGCGTATTCGCGCGTGTTCCTGCTCTTGTTCCAGTTTTTTCAATGTTCTCCATTGCGATTTCTTTCTTTAGTTTCTTGTCTTGTTCCTGCAACGGTTAAAAAAAAGATATCGGAAAGATGGATGgtgaatataaagctcataagtgtggccattcaaatgaaagctacagagcattactttcttatttatgctgctaatgtttttaatatttatggcggg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04410 all species →	Gar1	Gar1/Naf1 RNA binding region	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038664 all species →	Homologous_superfamily	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	Interproscan
IPR007504 all species →	Family	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	Interproscan
IPR009000 all species →	Homologous_superfamily	Translation protein, beta-barrel domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23237 all species →	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0042254 all species →	Biological Process	ribosome biogenesis	Interproscan
GO:0000454 all species →	Biological Process	snoRNA guided rRNA pseudouridine synthesis	Interproscan
GO:0031429 all species →	Cellular Component	box H/ACA snoRNP complex	Interproscan
GO:0034513 all species →	Molecular Function	box H/ACA snoRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11128	GAR1, NOLA1; H/ACA ribonucleoprotein complex subunit 1	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.