Gene detail

Detailed information of TcoG027104.mRNA1 in Tubastraea coccinea

Genomic Location: ptg001805l:42329...55678
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG027104.mRNA1

GCCAAATATGGCGGATGGAAAATTACATAGGATAAAAGGGTGATGCTAATGAAAATTTCAGACATTTAAACCTCGCTCTGCAATTCATCTCACAAAGTCGTTCATTGCTCTTCGCATTTAAAAGGTAAGATATTTTCTCATCCGTTTGAAATTATTTACCGTAAAATTGGTGCATCGATGATAGGACCCGTCAAACTCGTCAAACCAGTCGAGAGAATCGCGATCGTCGCCTAAAACCAGTTGTGGCTTGCATGCATGCAAGTGTTATGATTTGCACTTGGTCTCGTTGATGTCTTACTTTTTTTTAGTTTAGCACCGTTTTCATGGATTTATATTCATCTTAACCTTTGGAACCCCGGGATTTATAAATTTTGCTGTTTGTTTTTATATGCTGCATGTAGATGTCTTCGTTGGCCAACTCGCTCTCTCGGTGAGCATCAGCTGGCTTATCTGCCTGGAACTTCCAGTCAACTTCGCTGTTTTAATCCAAGTTCTCACTGTCGCGAGGAAATGTTTGTTGCAGATGTATACAATGAATTGGAGGCGAAAATCAAACAATCAACAAGACATGTCTGCTGCTGCTTTGCTAAATCATGGGGCTTGGTCGCCAAGATACTGCTCCTGCATTGGAGCTACTTCAATGCATGAATAACGACAGAGGTTCAAAGTCCAATACCCCTTCTGTGCCCTCTTCACCTCTGACGCTGATTGAAAAAATCAATCAAAAGATTGCTGCCAATGAAAAATTCTTCAGCTTGGAATTCTTTCCTCCGAGGACACCCAATGGAGCAGTGAATTTGATTGCAAAGTTTGACCGTATTGCAATGGGATGTCCTTTGTTTTGTGATGTGACATGGCACCCTGCTGGGGATCCTGGAGGTGATAAGGAGACCAGTTCAATGACAATAGCTAGTGCTGCTCTTAATTACTGTGGACTTGAAACCATGCTGCATATCTCCTGTGCTAACACAGTGAAGGCCACAGTGACAAAGCACTTGACGAAAGCCAAATCTTTGGGAATTAGGAATGTTCTTGCCCTCCGTGGTGATCCAGTGAATGGAGATGAGTGGCAGGCCCTGGATGATGGTTTAGCTTATGGTACAGACATGGTTAAACACATTCGAAAGGAGTTTGGAGACACTTTCACCATCTGTGTTGCTGGTTATCCCAATGGCCATCCAGATTGTCCCAGTTATGAAGAGGATCTACAACATCTGAAAGAGAAGGTTGATGCTGGAGCAGATTTCATCATTACTCAATTGTTCTTTGAAAACAAGACATTCTTCAAATATGTTAAAGATTGCAGAGAAATTGGTATCACTGTACCAATCATCCCTGGGCTAATGGCAATTCAGGGTTATGCCTCCTTACGTCACCTTGTCAAGCTTTCAAGGTTAGAAGTACCGCAGTGGATTGTTGATGCCATTGAACCAATTAAGGATGATGATGAGGCTATACGTAGATATGGTGTTCAGCTGGGAATTGAAATGGCACGTGAATTGTTAGCGAGTGACGAGGTTCCTGGATTACATTTTTACACCCTGAATCGAGAAGTTGCCACAAAAGAAATTCTCACGACCTTAGATATGTGGTGTCAGGATCCTGCTGCCAGCAGACCATTGCCATGGAAACCATCAGCAAACAAGAAAAGGATTTGCGAAGATGTGAGGCCCATCTTCTGGGCATCACGGCCAAAGAGCTACATGTACCGTACATCAGACTGGGATGAATTTCCTAATGGGCGATGGGGGAACTCCTCATCTCCTGCATTTGGTGACATTACCGACCATCACTTGTTTTACCTACGAAGCAGAATAAAAAAAGACGACTTGCTGAAAATGTGGGGAGAGGAGCTTACTTGTGTGGAAGATGTATTTGAAGTGTTCAGATGTTACATTTCTGGAGAAAGCAACAAATCTGGTGTGAAGGTGAAATCTCTTCCCTGGAATGATGATACTGTTGCTGCAGAAACATCATTAATCAAAGAAAAGCTGGAATTGCTCAACAGCAAAGGAATCTTGACTATAAACAGTCAGCCTCACGTTAATGGTGCTCCATCTTCTGATCCCATGGTCGGATGGGGAGGCAGTGGAGGATATATTTACCAGAAGGCTTATCTGGAGTTCTTTACCTGCAAGGAAGTTGTTGATATTCTCCTTGAAGTTTTGAAGGAATATCCTCAAGTTAACTACCATGTAGTGAACTGGGAGGGTTCAGTAAATGTGACCAATGCAGATAAGTTCTCGCCCATCGCTGTCACTTGGGGTGTGTTTCCTGGAAAAGAGATTGCTCAGCCAACTGTTGTTGATCCTATCAGCTTCGAGTCATGGAAAGATGAGGCGTTTGAACTTTGGCAACATCGATGGGGCAGACTTTACCCTGAGGGCTCAGCATCAAGGCTGGTCATAGATGGAATCTGTAAAAACTTTTATCTTGTCAACCTTGTGGACAATGACTTCATCAAGGGAAACTGCCTGTGGGAAGCGCTCGAGAAAACAGTTCATTTAAGAGAGTTGCATCAAAACAACCATGCAGTTCAAACATAAGTCACAAGAGCATTTCACAAGTTGGGCCATAAAATTTGCAAGATGGAAGGATTTGGAAGTATTATTACACAAATGCATTTTTAATGTTCAGTGCCAAGTCAAAGACATTGATTAAATTTTGATGAAGTGGAAAGTGACAGATGAAAGTACATATACAGCATAATATACAGTGCATGTACTTGGCAAGATGATATAAAACCTTGAAATTGTACCAATTTGTGGCAAAGTGAATTGATGACTGGATTCATAAGATATAATGGTTAAGTAGTTTATAAATGTCTGTTATCTAAATTAGCATGGCATTTATTCAGACTTTGCCAAACATCTTGTGATGGTATATAACCCATCCAGTCATTGAGTTATTTAGTTGTCTATAAACATACAGTGAGAGAATTCCCTTAAAGATATACAATTGAAAATTTTTAATGTGGAGACATTCGTGATTCCACTTATTTATTTGGTTGCAGTATAATGTTGCAAGTGACAGACATCAACTGAAGGGAAATACAAAACATTTGCATGTTAGCAAAAAGTTAAATTTCTGTAACAGCTTGTAGAAACAAGAAAAACTAAAAGTGTTTGAGTTAGCTTTTTCACTTCCATGAACAGCATGTTTGAAACAATAGAAAAGTACCAAACCATACCGTACATTTATTAAGCTTTCAATTGAATAATCACACTTGAAGCAGGGTTAGACTCAACAGCTCACATTAAATTGACCAAGGTAAGAACTCTGCAGTGGGGTAGAGATTATGTTGTGTACATTTTTATCAGAAGTTTGTTTTCTTGGAGACTATCAACTCCACGAGGTGTTTTCCTTTGCATTTTATTGCATATTCCAAAGTGTATTAGCAACTCCTCAAGtccttattctcaccacatgtctgcttgacaatgtgttaatatcataaggagaaaatggatgttgatcactCTTGGTaatcctagcttgcgtagcaggcgcatgaaaataatatgggcacaagaatgaacagggcgcgcgagggggacttgcgcccatatttattttcatgcgcctgctacgaaggttaGGTAATCCAAGATATTTAGATGATGACTTCTATTATATATTTGAAGAAATTATTTTTACAATGGATATTGGTTGTGGGAGGGGGATTTATAAATTAAAACCCAGATTTTTATTACTAAAAGCATGTAGCACATAGGAATTCTAAATTAAAACGTGTAGGTTAATACATACACATATCTTAAGACTTGCAGGTCATAAAAAAGTCAGTTACTTGTTAGAGAAGATTAACTCCTTTATAACTTAAGTTTGTTTTTAAGATGGCAGAAATAAAATGAAAGGTTTAGCAATTAAAATGTGTACTTCCAAAATTCTTGGGCTTGTACAGAGGTTTTACGGAGGGGTTGCAACAGGGAAATCGGCAGCTCCTAGGTGTTGGGATCGCcaaaagattaaaaaggcactgaacaatactcacatcacaacacaacagaacaattactaaccaacaatggtttctgccacaacaagaaatacTCGTCACATCTTCTAC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02219 all species →	MTHFR	Methylenetetrahydrofolate reductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003171 all species →	Family	Methylenetetrahydrofolate reductase-like	Interproscan
IPR029041 all species →	Homologous_superfamily	FAD-linked oxidoreductase-like	Interproscan
IPR004621 all species →	Family	Eukaryotic-type methylenetetrahydrofolate reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45754 all species →	METHYLENETETRAHYDROFOLATE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004489 all species →	Molecular Function	methylenetetrahydrofolate reductase (NAD(P)H) activity	Interproscan
GO:0006555 all species →	Biological Process	methionine metabolic process	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0009086 all species →	Biological Process	methionine biosynthetic process	Interproscan
GO:0035999 all species →	Biological Process	tetrahydrofolate interconversion	Interproscan
GO:0071949 all species →	Molecular Function	FAD binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25004	MTHFR; methylenetetrahydrofolate reductase (NADPH)	EC:1.5.1.53	Antifolate resistance	ko01523	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.