Gene detail

Detailed information of TcoG028398.mRNA1 in Tubastraea coccinea

Genomic Location: ptg001991l:145272...156037
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG028398.mRNA1

CAGATTTTCCCGTGCGGGGCCTAGTAAGGATTTCTGTTGTCGTTGTCAAGGCAAAGAAGTGTCTTGTGGGATATATAGCAAAAATGGCGGCCGAGGAACAAGATGTGAACATGGAAGAAAGCACGCCATCTAAGGAACAAGGAGGGCAAAAAATGTTCACTCTTAAGAAATGGAATGCCGTGGCCATGTGGTCTTGGGATGTGGAATGCGATACATGTGCTATTTGTCGCGTACAAGTCATGGATGCTTGCCTTCGATGTCAGTCTGACAACAAACAGGAGGAATGCGTTGTTGTGTGGGGAGAGTGCAATCACTCATTTCATAACTGCTGTATGTCACTGTGGGTGGTGCAAAACAACAGATGTCCGCTGTGTCAACAAGAATGGGTTGTACAAAGGATTGGCAGATGATACTTGGCTTTCTGTGAAAGCTTTCATCAAGAATTCTTACTGGACAGATTGATCAAAGCAAAGCCTCTCTTTTCCCTCTTAGATTTAACTGAAATGGGCTGTTGCGTGCAGACAATTGTCTTCTGCAAGGAGACACAATACAGTACACAGATGAGAGAGTTGCAGACATTCTTCTTGTGGGACATTATTTTTGCACTAGTCACATATTTTGCTCCATCATTATCCCTGAGGGATAAAAGATAGATATCTCTAGTAGTGTTTATTGAGGAGTTGAAAAGCTATATTCTGTAAACAATACCTTTTAATTGGCAAACTGTCATGCACTTTTTTCCTCTACTTGATGAAAACAAGGACAAAGCATGGTAGAAAATGAGACTTTATTTCTGTCCACCACTACAATAAATTGTTAATAGTATTCACAGAGGTAATATTTTATAGTTACACTTGTAATGATGTAAGCTAACTCCTGTATTAATTTAACTAAAAACTTTACAGTGAGTGGCTTACAACAGAGAAAAGGATTGTCTGCAAAAGAGATTTGGCTACCCCATCTACAATAATAATGTAACAAGAAAATTGGTATGAAAATATTGTTTCAGTCATCATTATATATACAACTAACACCATGTCCACCAGCGAGGGCTTACCTGTCAACAGTGAACATAGTCTTAAACACCAAATGAGAATACCGTACTTCTTGTAATTAATTTGGCAATGGACACACATTGGACGATACTAAAAGTGCAGTTGGACCCACTTAGCCATGAGAAAATTTATCCAATGTGCTACATCAAACAATTGCACATATAATTATGACCACTTCTACTTGAAAAATAGTTACTGGTACATGCCTTTTAATCCAAGCAATATTATTTTGTGATTGGTTTAGCTGGCAATAATGCTCTACACTAAGTTTACCTTGTACATCAGTAACAGATAAATCTCATATGCCCGAGTCCGCttaaagtgcacctaacccccccccccccccaattttttttgcttaatcaactctatgtatgttgaatatttcttgtttttaacgttgcattagtgagttatagagatttgaatttacaaaatgctaattagatgacgtaaattcgagaatcatttattatacaactacttgtttttacctccaagtaatattttttacaaatcaattgactatccacagtttatatttgatatttctcaaattgattttccttaagttgtatactgcatattgttaattgacgtagaaataatggcaaattcccgaatttacgtcatctaattagcattttgtaaattcaaatctctataactcacaggcgagacattaaaaacaagaaatatttaactattcaacttttcaacgtacatagagttgattaagccaaaaaaaaaaaaattggggttaggtgcactttaaCACAGACATACTGACAATTTCTGTGGTCCCTGATAAGGTGTGTGTATTAGCAGGATTCAGCTGTATACAATGAGAATTTAAGGGCCGCTTTAAGGAAAACAATTCAAATTTACTTATGGTCttacagtgaaactacctcaactggggccacccgaggactttcagccaatcagagactgattcttaaacaaagaattaggcatgctgacctcacgggaaactgtatcattttttgattggttaatttcaatcctaaatttctggctgtctttgaaaactttgcacgttttctttacagctaaattgcaaaaactattgatttcacagtggaatcctgattttttaaacctccaagggaaacggaaattgcttcaaaaaatcgaaggtgctaatgactgaaatcaaatccaagggaaacgagttttggttcaaataatcaggagtatcgttattggaagcgctatacttgcgtattggaaagaatcatcctggtaagcggctatgatgtttttatgttaacaagacaagtgttcagttactgtcattattgtatgttacgacagtaacgttattacacgtcgttactgtttgaaattcataaacttctcgccacgtcaaataaaaagcgttttatttccatttctgtagaaatagttttatagcaatcgaagagaaaaaatagcagggtcaatcacaggaaagccactcaatgttgcgtgacgatttcatttcccaaatgaatttctctaaactacatgtcgagggttccaatttttctgtaaaacacttcgttgtcgacaaaaggatctttttttatttttggtttacaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12678 all species →	zf-rbx1	RING-H2 zinc finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024766 all species →	Domain	Zinc finger, RING-H2-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR051031 all species →	Family	RING-box E3 Ubiquitin Ligase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11210 all species →	RING BOX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0031461 all species →	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031466 all species →	Cellular Component	Cul5-RING ubiquitin ligase complex	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10611	RBX2, ROC2, RNF7; RING-box protein 2	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.