Gene detail

Detailed information of TcoG032153.mRNA1 in Tubastraea coccinea

Genomic Location: ptg002519l:34175...55281
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG032153.mRNA1

GCGGAGAAGACCCTGGGGACGAGGTTGCCCCAGAGCTAGAGCTGCCTCCTTCTTCCGCTTTCCGCTGTCGAAGTCGTTGTTTTTTCAGGCATTGTGCTCACAGAATGGAGAAAGAGAAACCCAGAAAAGAGAGAATTGCAGCTAGGGTTAAGCGTAGAATGACATCAGTTCTCAAACAAAGAAGACGGAAAAGGAATAAAGAAAGTGATACGCCTGACCCACAGCAGCCTGGTCctgatgaacgtgaacatgatgaaccggaacttgatgaacCAGAACAACAGCAGGATATAAGCTCCCCGGAGGAGAAGTCACAAGCAACACAAGATGAAACCTCAGCCAGTGATGAGAAACTTCTCAAAGATATGCCTTCAGAAGGCTACCAGAAACTGGTCAAGTTTTTACAACCATTATCTGCCACTGGAAGAGACTACAGGTCATTGGCAGGCAAAATGGGATACTCCAACCAACACATTCAGTATCTTGGAAGTACAAATGATCCAGTTATGAACTTGATAAAGGACTGGCAGAAAGACAACAAGAAAATTTCAGAGCTGGTATCGCTATTAACGGAAATGGAGCGGGTTGATGTGCTGGATGAACTTCAACCATTTATAAAGGCAACACCAACTCCAAGGGAGATAGTGCATCGTCAACAAAGACTTGGAGAGATTGAAGAGCTTAGAACTGTTCATGATTCTTATCATGCATTTGTTTGCTACGCCAAAAATGCCAAGAAAGACAGCGATTTTGTTGCCAAACTTGTCAAAAAGATGGAAGGGCCGCCTTACAATTTAAGGCTTTGTTTGAGTGAACGGGACTTCCTGGGAGGTGGCTGTTATCTTGAAACTGCTGCAGTGGCCATTGAAAAACGATGCAAGAAGTTTGTGGCTATTCTCTCAACCAACTTTGACAACAGTGAAAGAGATGGAGCACGGTTTGAGTCACAGTTTGCAATGAGTCTCTCACCAGGGGCAAAAGAAGAACGCTACATCCCTGTTCTTATTGAAGACGCTTACAGAGACAAGATTCCACTGACAATACAACATCTTTACTATCTTGATTACATTAGGATAGAGGAAACTGTCTTCTGGGAGAGATTAGCTCGTTCACTGATTCACTAAATTAGCAGGTTCATTAAATTCATTGCATGTGCAAATAGTAATATTATTGGAATGGAAAACAACGTGCATTATAAAATGAAAATCAATGTTAAACATGGAAATTAATATTTCATGGTGTTCCAGTTTTCATCGGAATTTTTGGAACTTGTAACAATGTAAGGAAGATGTTGAAACTTTCACTTCTTTGCTTTGCTGATTTTAATTTTAGAATGGCGGCTGGTGCAACAGAATTATTGTGGAAAAACACTGTAGATATATAGACTGACATTGTGCATGTTAAGAAAAGTTTATATTTTTTCTATTCTTTTGTATCCATTTAGTAACTGTTTGTGGTTTTAAAGTGATCGAGTTGTTGTAGATAACATTCTGGATTAATTAGGCTTAGTTTAACTACCATATTTGTAGGATATACATGACGTTTTTGCAGGTTTTAATATTGCAGAGGTCCAGGTTACGTGAGAACATCCTAAGCGACATCAACATCTGTAATTACTATTATTATAATTATATTTTTCTTTTCAAGGGGGCAATATTTTGACCTGTTTGTTCAAAGCATGATTAAGGACCTGTTTACATTGACGGACAggtcaccctctcagccgggctaaaacatagcctgcctttacatgggcgggctattagggcgggctatcatataggcgagctatctctttttggcgggctcatgttttggCCGACGTTTTACAATTTACTATGTTCTTCTTCTACAGTGGAGGCTTTTCACAAATAAACTCGATGAAAATATTCGCCACGCTTGTATGGCGCCGCCATTTTCGCGGGTTTTCTAGTCAACagagtgacggggtgaccgtttacatgcaggaaagatagccagcctaggaggctgaccctggcaagccgacagggtgaccctggtaggcaggtgaccctgtctgtcatgtaaacacttcaatgtgctttgtgaagaagtgtatgaaaagttggcccgcccagggtagccggctaggggggtgactggtcaccctccctccCTCCCTCCCTAAGTTAATCATGGATGAACACCAGCAGAAGCTTATCCCTTATGAGCTTCATCTGTAAATTTTAACTTTGAATCTTTCCCCCTCCTTCAAGCTCACGTTAGCTTTCCAAAACTTCTCTATAGAGTAAAATGTTTATGGATTAGTATTAATCAGgccccggttcaaaaggtggatggataaatgactatccagtggatacgtattaacaaaatccattgtgttatccactggatagtggtttatccggtggatagcactatccaccttttgaacagccggggcCAGCCTTTGAAAAACCGGGCCCTGAAGTTTTGCTCTATTTTTTACCCTTTTTTGCGTTATTTGTTGAGGTGTTCTCATATAGGACGTTTGTCTGATTTTATTGATTTTTATTTTGAAGTCCACTTAAGTTTTATGATCAGTATATAGTAAAATTAATGGTATTATGTTACATAAATATAGATATAAATAGATAATGAAGAGGTTGATAATATGTTTTTTTTTAATCAGAATCAGTTGTAGATTGTTATATCCAATTTGTATCATACCAAAGTATTTTTAATAGTTTATTTTTTTATTCACTTCCTAAGGGATAATGAAGTACTTCTTTATAATTGAACCGGGATAAAAACAAAAGAAACATTAACCTAATACATTTAACCAGTATAGTCAAGTAGAATAAAAAGAGATGTATTATAAATAAAATATCATAAAAATGTATACATTCCGTCAGTTTACATGCTAAATTGTTGCTTTAGCTTTACGAATTTTCATTTCTAAGGATATTGTTAATAAAATGTTTGTAGATGATGCGGT

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan
PF00531 all species →	Death	Death domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR000488 all species →	Domain	Death domain	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR017281 all species →	Family	Myeloid differentiation primary response protein MyD88	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15079 all species →	MYD88	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0002755 all species →	Biological Process	MyD88-dependent toll-like receptor signaling pathway	Interproscan
GO:0043123 all species →	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:0070976 all species →	Molecular Function	TIR domain binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for TcoG032153.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.