Gene detail

Detailed information of TcoG032722.mRNA1 in Tubastraea coccinea

Genomic Location: ptg002609l:195836...210471
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG032722.mRNA1

AGATGTATCAAAATTCAAAGATGGCGTCCATGAAAACATCACCTTATCTGGAGAATTTCTTTATTTACAATCCCACTTTTGGCCCAAAAGAAGGAATGGAAAAGGAGAAAGTTGTTCTGTACATTCCACCTGGAGAGGACCTTGACAAGAAAATAAAAAATATAGGGCTTTGCGAAGCATTGGTAAAATTCACACAGACATTCTCACCAGACAAGCCATGCAATTCGCTTCACACACAAAAAACAAGGCAAGTCTTTTTTGAAGCAGAACCAGAATTCTGGATGATCATGACTGTCAGCATTCCTTTCAGTGAGAAAATGGCAAAGGATGGCAAGATGATTATTGAATACCATGATGAAGATGTCTTGGATTCTGTTCTTGATGCAGTATTGAAGCAAGCATACAAAATGTTCAAGCTCTTCAATGGCACATTTACTTATATTATCAATACCTACAACCTTGAAGCTCTGAGCAAAAGACTGGAACATTTTTACACATCTTATTTACAGACCTTAAACTTTTCCCAGTTTGATCTCTTGGATATATTTTCAGGAATAAATTTTCTACCACTGGACAAAAACACCTTTCTTAGGATCCAATCCTTCATAAATGTTATTGAACATTCATTTAGCCAAATAAGATACACTGCTTTTCTGTACACTGAAAAACTTGTCTGGAGTGGTCTTGAACAAGAAGACATGCGCACACTGTATAAATACTTAGTATCAAGTCTGTTTCCTTCAACAACTGACTTAGAGAGTATGGAAAATCCAAGGTCCCAAGGTTATGTTGTTGTCCAACCCAAATCTCATCATGGAAGGTTTATCACAGGCCCTGCTGATTTAGGTGATGTACCAACACCAAGAACACCACCTAAAATATTTGTTAATACAGAATCTGAGCAAGAAGAACTGGTGCTTATAGTTTATAAGGCATTAGAAGCCACGTTATGTTTAATGGTCTCGGGTCCCTATCCTAGTCTAGATTTCTTTAAAAAGATTGATAGTTTCGTGGGCCCTCAACTTACAACACTGGCTAATGTTATTGGTGAACAAAGCGCGAAGAAGCAGCAGAGCACGGACCAGCAGTACCGTTATCTGTACTTCAACCACATGAATTTGGCACAGAAGACATCAGTTCACTCCAGAAAGTCCTCCCTGCCAATTGTTGTACCTGAAATCATGAGATTAATGGGTGACATAAGTGCAGATTTTGCAAGTTTCCAGGAAGATGGTGAAACCTTTGTGAAGACAATGTCAGATTGCTGGATTGTGGGTCGAAAATCAGATCAGCGAGAATTGTTTGTGATCTTGAACCAGAAGAATGCCAACCTTATTGAGATCGATGACGAAGTGAAAAGATTGGGCATCACACAGTTCAACAACATCTTCTTTCTGGACTAGTTCTGAAAAGTTCTGAGACATTTGACGCATCCGTTTTCATCTAATGTCATAAAAATTCTAAAACCTAaacagcttctttatatcagcaatagtaatcatcgtgccaagtgtcatgtcaaatcattaaatttgtttggagatagcattttaaaaatttgggcggtgcaactgagcgttctcatgtacaatcacaagacaagtattccccagtatttttcacgcagtttgtggacaaatcagaggtcttttggatctttgaactcaacagaaacaattaaaatttagACACAAATTGTAAGTCATATTGTTCTGCTAAAAATGAGTTTTATTCAGCAGTTCAACCAATAGCACAAAGTGAATGACAGTGGAAAAAACAATAATATTAAAAAGTTAACTTAGGAAGCTTTAAAGTTTGCTTTTTTTAGATTAAACTTTTTGTTGCATGGTGATATCCATAGTTTTATTTTTTTTTTTTCATGGATGAAATCTGTTTAGCAACTCTCATTTGAATAGTCACCTGAGGTTttcacccttcaactccaagagtgccaaaaatcaacaaatcccaaatttcattttataaaaattatattgaaatgaaatgactaccaaagaggtttcatttgaatgcaggggcagatctaggagagggtgctggggtgtgcacccacccctcatattatgttattgcctagtctgcattgttcgcttttgtttacgtcacccttcagttatgtcattccttagaggtgcaccccctcctaagaaaaatcctggatccacccctgGAATGGTCACACCAAAGTTAAAAGTACACTACATTATTCTGGGAGTGAAAGGCTTAAAGATGTTGCTTAACTTTGAATCTGTAAGCAAAACGTTTATTTTGAAGTCACTAATGAATTTTAAAACAAATCACTCTATGGTGTATAATTATGTAGAACATGAGATGGGCTCTGCAAAAGAATGTCCAAAGTGATTCTTCAGGCCCCATAATTTGGTGTTATCAGTAATAACATACCGGTAAGATTTTCAGCCAAATAGCTCAAAAATCCCTTAGGACACTCTTCCCTGAAGCCTTAAATTTACAAGAGATAAAATATTTCACATCTATTTTGTAAATATGTACAGAATTGCAGAAGATATCCATGTAAAATTCTGCCAACAAAATACACTTGGTTTTTTGGTCTTAATTGTGTTGTCAATGAAACAGTATTATAAAGAGCTTCTGAATAATAACTTTGTGCTTTAAAATTATTGAGATGTTAAATGAAGTTCATTAAAACATTTTCACTGTTAATCtttttttatttttttttttCACCATAATATACAGCTGTACAAGTGTTACAGGTTTTGTTGCATGTTTTTTTTAGTCTATGTTTTCCACTTGCAGCATGTTTGATTTAACCGTTTTGTTAGGGAAATGGTATAtagcagtaatcacagcttatgaagacgcgttcgaaggaatttccggcggaaatgagcccctgaaaaaaaaaacaataggggcggccatttggaagaccgtctaccaaaaaatctcaaattttactgcacataaaccacaggacaaccaacacgaaattaggattgcattctttgaatgcgatAACtgtacttggacaggacccaccattgtacaaaaagactggtggaccctcttcgtgtactaaccaccccaaccccctgccacataaaaagatggtgtcttgttgactatagcacaccccactcAGCCTTGTCTCCAGGCCTAAACAACTTGCTTAATCTCCCTAATCAGCTTGATGGGTGAGGAAAACTGGGAACGAGGCtagcacccactctattaggagtaaaaactaagaaaaagattcaacatttccagtgctgttttactagcaatgcaagcttaatgcacacagaatattaaaagtatcgtctcaaagttttaggccaataaatttgatcattgggcttatcagatgggtggtttcttgcatcgccTTGTTGAGTATTCTTCTTATAACACTTCCCTTATTACATAATTTTATATCTGGTATTAAAAGATGAGATGCTCTGAACCTTGAGAGCAAGCATTGcaaccttttctcatcaccttcttcccat

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19032 all species →	Intu_longin_2	Intu longin-like domain 2	Domain	Interproscan
PF19031 all species →	Intu_longin_1	First Longin domain of INTU, CCZ1 and HPS4	Domain	Interproscan
PF19033 all species →	Intu_longin_3	Intu longin-like domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043988 all species →	Domain	CCZ1/INTU, second Longin domain	Interproscan
IPR043987 all species →	Domain	CCZ1/INTU/HSP4, first Longin domain	Interproscan
IPR013176 all species →	Family	Vacuolar fusion protein Ccz1	Interproscan
IPR043989 all species →	Domain	CCZ1/INTU/HPS4, third Longin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13056 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016192 all species →	Biological Process	vesicle-mediated transport	Interproscan
GO:0035658 all species →	Cellular Component	Mon1-Ccz1 complex	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27045	CCZ1; vacuolar fusion protein CCZ1, animal type	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.