Gene detail

Detailed information of TcoG034367.mRNA1 in Tubastraea coccinea

Genomic Location: ptg003026l:143622...162480
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG034367.mRNA1

TGTGCTATATATAGTCGCCCGTATATAAAGGAATTTTTTCTGTATTTTGCTCACATTCAAGCCTTGATATGTAAGCTCTACGCCGAAGAATAAAATTGAGCGAACAATGGAGAGATTGTGTGAATTATTCGAGAAGTTAAAACCCGACAACGAACAGACTAAAGAGCTGGACTTTGGAACGGTAGATTCAATCATCTCTTCTCTTCAATCGAAACAAGAACAATTTAATGAAGCAACAATTCAGATCGTTCTTGGGGCCATCCTCCCTTTGATGCAAATTGATGTACCTGAAAGCAAAGCCAAAGTTTTGATGCTTATTGCAGAGCTTGCAAAATCAGAGGAAACCAGAGTCCCATGTGTGAAGGCAGGGCTTATTTCTACCATCTTAGCACATCTTGAAAGTGAGGATCCAAACATTGTTCTGCAGTCTTTGAGGGCAATTGGAAATATCTGTTATGAAAATGAGCAGGCAAAGTCAGTGTTGTTGGAAAACAAAGGAGCTGAGAAGATTGTCAACAAGTTAGGGGTTCTGGAGAAAAGCTTTGATGAAAACAGCGACAATAGAGTGGAGCTGGCTGCCTGTGGATCCATGCTTAATGTTGCAAGTGATGATGAGGCTCTGGCTGCTGAAGCAATTTCATTTGGAGCAGTTCCATTCCTGTTTAGCTTTGTAAAGCAAAGTGTTCACAGCAATTCATGCCTCTGCAGTATGGCTTTATCAGCATTATCTGTGCTAGTCTCTTCAGACAAAGGAAAAGCAAGCTTTTTGGAGAGTGAAGGGGCAGCCATTTTAAAGATGGTTGTACAGGAAACAGATGATGATGAATTGATTGACTCTGTGTTTGAGATTCTATCCTCTCTTATTATGGATGATAATGTGAAGAAGTTGCTTGTCCAACAGGGGTATGCTGAGCATCTAGCAGATGTAGTAAATTCATTGAAGCACGAAAAGGATGAATATATAAAGCATAGAGTGCAATCTTCAGCTGACTTCATTGTTATGCTACTTACTGAAGATGAAAGTATGAAGGTGTTGTTCAGTGATGGCGATGGTTCTGTCCTCAAGGCGTGTCTGTCATGGCTGTCTTCGGGTGATCAACATCTTGAAATTTCTGGTTGTTTGGCTCTGGGAAACTTTGGCAGATCAGATGAAAACTGCATCAAACTTGTTGAACAAGGGGCCCATAAACAACTGCTGCAATTACTGGCCAGGACTTCAAAGAGTGAGAATCCTGGAAGACATCAACAGGCTATTTTTAGTGCATTGAAGAATCTTTCCATGCCAGGGGTTAATAAGGCAAAGCTTGTAGACAGTGGTTGTTTGGATGTCATTCTTCCTATGCTCTCGACCCAGTCTCCCTTTGTCCAGTTTAAAGTCCTTGGTACCCTGCGCATGCTCCTGATGGGTCAAACTGAGGTGGCCAACAAGATTGCGGGACGTAACGAAAATATGAAAACCTTAGTTCGGTGTTGTGAGTCGAGCGGCCACGAAGGCGTTAAATCCGAGGCCAGCAGAATGTTAGCATTGATTGCTAAGCAGGCCCGAACGGCAGAAGTTGGAGAACAAATTATAAAATGCGGAGGACTAGCACCTATTGTTGCCATGGTATCTTCGGAACATGACATCATGCAGAACGAAGCGTTGATAGCTTTGACAGTAATTTCATCGACAGTTAAAGAGGACTTCTATCCCAAGTTCAGAGAAAGCGGCATCATTCAAACGCTTATTAAGATGATAAAAACACAAGGCATCAATCCACAGACATGTTATAACGCCATGGCTGTCTTGGAATCATTTTCGCTTAAAGAATATTTCCGTCGGGATTTACAAATTGCCGGCATGAATCAAGCACTTGACAATCTTACGACTCATGAAAATGTGAACGTGAAGAAAAGAGCTTTGATTATCCTTACAAGGATCAAGGCCCAGAAGATTGCGGAAGAGGAATGAGAGATACTTCGGTGCAACTTATATGACGTCACATTACGATTCTCACAGAAGGGAATGAGAGACACCTCGATGTAGCTTACTCCACGTCATGTAGCGTCACGGAACAGCCAACCTCGTTCCCAGGGTCTCTCTTCCTCCTGGGAACGAGGTTGCGCGGTAGCGGGTACACTGATCCATCTTACTTCACGTCACAGAGCGTCATGTTGTAGCAAGGATGAGAGACAGTTCGATGCATCTTACTCCACGTGTCTAGTTGAAGTGGGAAGGGAGACATTTTGAAGCTCGTTAGATCATCATCATGTTGTCTGTAATGCGCACTCGTAGAACATAACACGCGATTTAACGCGAGGAAATATTTTTAATTAAGGCCGAATACTGAGTAACAGGCCTTGCTGGAAACAAACTTAGAAGTTTCTAATTAAATTTGTGTTTCTAAGAATAAATAGAAGAAATCGCAGAAGTTTTGGAGAGATCTAAAAGGTTGTTAAACACAAATCAACGGTTCATTTCTTCCCGCTCTTTCTCAACCGACAAGAGTTCCTACTTGATAAAAACGATACAAATCCCAAATTTAATTTAATTAATATGTAAAAAAAAAACAataagtggttttcacgttacgtcacggcggccatgttggt

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03224 all species →	V-ATPase_H_N	V-ATPase subunit H	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR004908 all species →	Family	ATPase, V1 complex, subunit H	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR040144 all species →	Family	Rap1 GTPase-GDP dissociation stimulator 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10957 all species →	RAP1 GTPASE-GDP DISSOCIATION STIMULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000221 all species →	Cellular Component	vacuolar proton-transporting V-type ATPase, V1 domain	Interproscan
GO:0046961 all species →	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600 all species →	Biological Process	proton transmembrane transport	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for TcoG034367.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.