Gene detail

Detailed information of TcoG034693.mRNA1 in Tubastraea coccinea

Genomic Location: ptg003162l:64973...96310
NR annotation: no NCBI-NR hit recorded
Species Tubastraea coccinea · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

TcoG034693.mRNA1

GAACTAAACCAAAGGCGGTAAATATGGACGGCAGTAGGGAGGGTGGAAATCATGAGAAAAATCAATATATTTTAAAACGAACGCCGCATTTTGACTAAACCGATCTTTAATTAATTTTCAACTTTTTAAAAAATCGTTTAATAAGGCTTATATTCAGTTACTATAGAGGAAATTGCAACTGATCGCATCAAGATGAAAGACGTCCGAATATTGCTTGTTGGCGATCCACAAGTTGGGAAAACTTCGCTTATTCTGTCGCTTGTCAGTGAGGAATTTCCTGAAGAGGTTCCCACTAAAGCGGAGGAAATAACAATCCCAGCTGATGTGACTCCAGAGAAGGTCCCCACACACATTGTGGATTATTGTGCTTTGGAGCAGTCTGAAGATATGCTGATGGATGAGATTGTGAAGGCAAATGTAGTTTGTGTGGTGTATGATGTAACAGCTGAAGATTCTCTTGAAAGAATAACTTCTTATTGGTTGCCACTCATAAGACAAGCTTGCGAGGAAGACAGCACAGCAAAACCTGTCATTATTGTTGGTAACAAATCAGACCTAACTGAAGGAAGTACAATGGATACTGTTTTGCCAATAATGAACGACTACACTGAAGTGGAAACTTGTGTTGAGTGTTCTGCCAAGGAACTTAAAAATATATCTGAGATGTTTTACTATGCACAGAAAGCAGTATTGCATCCTACTGCTCCTCTCTTCTCTGCTGATACAAAAGAGTTGAAGCCATTATGCCAGGCTGCACTGTCAAGAATATTTAAGATTTCAGATATGGATAATGATGGATTATTGAATGACAAAGAACTGAATGACTTCCAGAATCGATGTTTTAACACTCCCCTGCAAGGCCAAGGATTACAAGATGTTAAGAATGTGGTCAGAAAGAATGTCGAGGATGGACTGAGAGATGGTGCTCTCACTTTAAAAGGTTTCCTTTTTCTCCACAAGTTGTTTATCCAGAGAGGCCGTCATGAGACGACATGGACTGTTCTGAGAACGTTTGGATATGGTGATGATCTTAAGCTCAGAGCAGAATATTTATGTCCAGCGATTGATATGGGGACAGACCAAACAGTGGAATTATCAGATGCAGGATATCAGTTCCTTATTGACCTCTTCCAGAGGCATGATAAGGATGAAGATGAAGCACTCAATCCAGAGGAGCTTCAGGAGTTGTTTAGAATCTGTCCCACAATGCCCTGGGGTGAAGATGTTCTCAGTTCTGTTGAAACTAATGCCAATGGTTGGATAACTCTTCAGGGATTTCTAGCTCAATGGACGTTAACTACGTTCTTAGACTACACAAGGATGTTAGCATATCTCGCATTTTTTGGTTACACTCACCATGAACATGAACCGTCCCTTTCAACTGCGATAACAGTTACCCGTAGTAAAGCTGTTGATTTGCAGAAGAAACAGACATCGCGTTCAGTGTTCCAGTGTTACGTTTTTGGACCGCCTGGAGTAGGAAAGACGGCTTTTCTTCAAGCCTTTTTACGACGAACTGTTGAGCCTGGTGAATCAGATAAAGATTTATCCAATTATGCTATTAATCTGTTAGAAGTAAACAGACAAGAAAAATACTTAGTGTTACGTGAAATTGAGTGGGAAAATTCTGGCTTCCTATTGCACGACAGACGGTGTGATGTGGCGTGTTTTATTTATGACTCCACAGATGCTGCTTCATTCACCCAAGTAGTTCAACTGAGAGAGAAACTACCCAAGACTGTTCCATGTCTGTTGGTAGCGGGAAAAAGCGAAGGAGTTGCAGCAAAACAGGATTTTGAAATGCAGCCGGCTCTGTACTGTACGTTAAACAAACTACCACCTCCTCAGCCCTTCTCGTCTCTAAGCAGACCAGACGTTTACAAACCTATCTACACCAACCTAGCACAAATGGCTGTCTTTCCTCACCTGTGTGGTCCCAATGCAGACGGTGTGACGTCGTACTGGATTTTTGCTGGCTTAGCAGCCGCCGTCATAGCAACAGCTGGTATCCTTGTGTTCAAATACTTGAGAAAAGGAGGTTCAACCACGTGACATCCACAGGAAACCCAATAGAGACAGGAATACGTATTGACTGGCCTTTGCTGGGTAAAAGCCTTTCTCTCGCCATAAACCTTAAAGTGAACGCGAAGAAGTTGAAACTCGATAATGAAATCTAACACTGTTGCATTTCGCGAAACCGAAATGGATAAGAGAAGATTAGTGATATTGTAAATGTGATTGCTATAGTTTTTATTTTAGCTAGTTGAAGTGTTTAAATTCAAGGAATATTTGGAGTTACTTTCTAATGTAAACAGTGCTTTTAATTATCGCTTCATTGTTGTCGATAATAGTTGATGAAACTATCTTTTTTTCAAATTTAAAATCAAAGTTTGTGAGATAAAGGAGTGTTGATTGACTTTGTCCAGAGCAATCGCGTGTTGTTTTTTGTTTACTGACCGAGGATCTGATTTTAGCGAGTTCATAATACTCATAACACAGCCATCCTTTCTCTTTAACCAATCATGATTAATTCTACCGTCTCTTTAATCAATCATTAGCAAACTGCACCTTTTTTGTTCATATTTGTTTTGATTACATATAGCCAGATGTGACTATTTGGTCTTAATCAGTCCACAATGCAACCTCGTCCCCAGGGTCGGAAGAGGAGGACCCTGGGAACGAGGTTGTCCACAATGATGATAAGAACTCCCCACCCCCTCCCCCCTCAATGTTACTGCAGTTAAACTACAGTGTGGTGCTATAAGTCATCTTTTAAAGTCATTAAAAAGATCATTGCTATA

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08356 all species →	EF_assoc_2	EF hand associated	Family	Interproscan
PF00071 all species →	Ras	Ras family	Domain	Interproscan
PF08355 all species →	EF_assoc_1	EF hand associated	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806 all species →	Family	Small GTPase	Interproscan
IPR003578 all species →	Family	Small GTPase Rho	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR020860 all species →	Domain	MIRO domain	Interproscan
IPR013567 all species →	Domain	EF hand associated, type-2	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR021181 all species →	Family	Mitochondrial Rho GTPase	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR013566 all species →	Domain	Mitochondrial Rho GTPase 1/3, EF hand associated, type-1	Interproscan
IPR005225 all species →	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24072 all species →	RHO FAMILY GTPASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan
GO:0007264 all species →	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0031307 all species →	Cellular Component	obsolete integral component of mitochondrial outer membrane	Interproscan
GO:0047497 all species →	Biological Process	mitochondrion transport along microtubule	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for TcoG034693.mRNA1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.