Gene detail

Detailed information of XP_001622761.2 in Nematostella vectensis

Genomic Location: NC_064047.1:12808821...12812031
NR annotation: XP_001622761.2, uncharacterized protein LOC5501463 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001622711.3

CAACACAAAATTTATATAGTAAGTATTGGCTAAAATTAATTAGCAAAATATGAAGAGAAAAGAGCAACCCaactgaaagaaaaatatcgAGCAACTCAACGCAGTAATGGGTGTCGTATGGAAAAAGCGATAGTATTTAACAATCCTTAAATAAGATAATATTCCTAAAATAAGAGCAATGACACACTTCTTGAAGGGAAAAGGTAAGCGTCTGAGTAtggaaaaataatttattagcTCCCCATCAGATATCGGTTCACTTATCCAGCATGCATATATGACATTAATAAATGATATCACCTTACGCATCCATACTTAGAGAATGTCGAGCAACACcttgtttgttattgtttatcattaaaaatacaGCGGTTCATTTGTAtcaaaaataaccatccacgattAAAATCGTACACTTTATTTATTAAGGTGTTTGGTTGAAAGTTTCTTAGTAACGTGCTTAAATAAGCCGATGGGACTAATGGATTCTTTTTGTGACTCATTATTGtgcgggagcgtaaaatggctGCGTGATTGACCTTTAAGTGTGGTAATTTTTCTTATACGACGCAATTTGGAGAGCTCACTCTTGAATGTTTAGTGGATCACCCCTAATGTGTTGTCCCCTGATTGGTTTAACTGAAATACTGACTATATCATGAGCATTTCAATGCCATTTTTGGGATGTGTGTTGGGTTTTCTACAAGAGAAGCTCAAGAAAAGCACGGAGAAAATAGCATTCTTGGCATTTTTGTCGGTCTGTCTTCCTTGAATCGTTCTCTTCATCTTGGTTTTAAGAATTCCTTACTTCTAATGACAGCAAAGTCATCGCTATCTGTGGTCTGAATCAAGGCGAGAATTCACGGGTTACACCTAAAAGCTATTATATTTCAATTAATACCGAGAAAGACGAAAATGAGTAGAATGATTCCAATAATTGCCGATCCAGACTACAAAACTCCAGAAGGGAGAAACAAATTGGACAAACCTACCCACTTGGCCACTGTGTGCGACGAATGCAACATGGACGACGAGGCGGGCAATATCGTGTTTTCGCGAAGAGAAAGACTACGAGACAGAGGGCTTCTACGCCGATTTAGAACCGATATCGAGCACGAACTCGACGGTAGGGATAGTGTTAGCCGTTTTAATGACGATTTTGATGATCCCGAATTTTGGGAATCTCGATTCCATGGAACAAGGAAAACAAGCGCTTTAATTCCAGGCAATAAAAAgtggaaagaaagaaaatggaACCTTGAGAAAAGTTTTAGTAAGACCGGAGAGGAGGACGAGTTTGTTAGTGTCCCGCAAAGATTAATAAGGGATGATGACTTGGAGGATTTTCCTGACATCATCAAAACATTCAGAGAGACTTCCAAAATACGAGGAAGAAATCCGAGCGAGAGGCGGGTAACGAGCGAGTGGCGAGGGGTGTCCGAGAACCCACGAAGACACGATAGCAAATTGTCGGAAAGTGAATTCATGAGCGAGTCTCCATGGAGGCATGGATGGGGTGAGGAGGGTGACATAGGAATACCGATACCCGTTACACAACAGAAAGATGAAGGGCAGAATAATAAAACGGATAATAAAAATGAGGATGAACTTGAACCTATAAAAGAGGGGCGATTAATGGACAGTACACCAGAAAAAACGCCAGATTTGAGTGAGAACATTTCTAAGGGTGAAGCTGAAAGTGCGGTTATGAGCCTAAAGGACAAAACGTCATCGGAGCAAGAGCAGTATTTGAGAGAAAAATCCCCAGggaataatgataataacagTAGCAAAGCAATATGCCTGGAAACCGAAAAAAGGCAGGAGAAAGAACAAGCTGTGAGTAATACAAGCTCTTATAATGTAAGCTCAAACTTAGATGATACCAAGAGCGAAGTCATATCAAAGATTAATGCGATAGAGAAGATAGTTGAAAGTCTTCAAGGCGAAGTGGAAGGCTTGTCCAAGTCAGGAAGTGGAAAGAATTCTAACGAATACTGCCGTCTAGAGGAAATGCTGACGAGATGCATGCTGGATTTGGATCAAATCGAGGCTCTTGGCGATCAGAGAGTCCGCGATGCAAGGAAGTCAGCGGTAAATCATTGCCAGGATGCGCTAGATAAACTCGAGGTTGAATGCGCAGGGGAAAGCTCACCATGACAAAGCAATGAAGAGCTGCAGAATGTCGTGGCAAGTTTTAGAACAGATGTTTTATGCCAGACATAAACTACGTAGATAAAGAATCAAAATGGTAGGGTATCAAAATAGTAGGGTGCCAAAATGGTAGGGTATCATAATGGCAGGGTGTCAAAATGGTAGGGTCTCAAAATGGTAGGGTGTCAAAATGGGAGGGTCTCAAAATGATAGGGTGCCAAAATGAGTGTAAAATGGTAGGGTGTTAAAATGGTAGGGTGTCAAAATGGCAAGCTGCAAAAAATGGTAGGGTGTCAAATTGGTAGTGTAAAATTATAGGGTTTCAAAATAAGTGTTAAATGGTAGTGTAATATGGTAGGGTGTTTAAATGGTAGTTTAAAATAGTAGGGTGTCAAAAAGGTAGTTTAAAATGGTATGGTGTTAAAATGGTTGTGTAAAATGGTAGTGTGTTAAAATGGAATGGTAAAATGGTAGGGTGTCAAAATGATAATGTAAAATGATAGTGTAAAAATAATGGAAGGGTGTTAAAATGGTTAATCCAAGAGGAAATGCAGCAGCTTCGatggctgtttttttttttctgactcATTATTTACACTTGTAATCCAACATGCAGCCCAGGATCACGGTGAGTATGACAAGAACTTACTAACGGAGTTGGATCCTTTTAAAGAGGCAAATGTAAGAATTTATACCACAACTGAATATCTGAAATCAGTGGCAATTTGTTGTAGAATTGAGCAACAACAGCTTCGTCCAACAGAATCTCAGTTAGTTTATCTTCACTTTCCGaaagcctgggctacctgtggtaatTCCTTGTCACTAGTCCTCGCCCGCGGGTAAGGCATCTTCTAGTTTCTTGATGAATTTGACGCGTATCTCTGTAGTCTCATCACCTCTTAGGGCGTCTTGTACGAACCACACGTCAACCTCCATCTGGACCTGACGCAAATCAACATTCGATGCATATCAATAATCAGTATagacctatttcaaaaaaggttgtatatcaaatacacctattttaataaaggcaattgccaaatggcagttc

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001640 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02179 all species →	BAG	BAG domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003103 all species →	Domain	BAG domain	Interproscan
IPR039773 all species →	Family	Molecular chaperone regulator BAG	Interproscan
IPR036533 all species →	Homologous_superfamily	BAG domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12329 all species →	BCL2-ASSOCIATED ATHANOGENE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0000774 all species →	Molecular Function	adenyl-nucleotide exchange factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0050821 all species →	Biological Process	protein stabilization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_001622761.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001622761.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

39TPM > 0

16Conditions

0.7Max TPM

0.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	0.16	0.30
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	0.20	0.28
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	0.36	0.42
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	0.21	0.25
whole 6 week old aboral regenerate · regenerate uncut	3	3	0.18	0.27
whole 6 week old aboral regenerate · regenerate 4hpa	3	2	0.43	0.75
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	0.29	0.51
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	0.15	0.22
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	0.14	0.22
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	0.23	0.29
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	0.17	0.21
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	0.14	0.23
whole 6 week old aboral regenerate · regenerate 60hpa	3	2	0.12	0.25
whole 6 week old aboral regenerate · regenerate 48hpa	3	2	0.12	0.24
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	0.10	0.20
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.05	0.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.30
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.17
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.28
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.23
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	0.10
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.42
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.37
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	0.29
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.25
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.19
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	0.19
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.27
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.21
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	0.08
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.75
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.54
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.51
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.20
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.15
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.22
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.14
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	0.09
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.22
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.19
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.29
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.20
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.20
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.21
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.17
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	0.13
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.23
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.18
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.25
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.12
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.24
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.11
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.20
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.11
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.16
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.