Gene detail

Detailed information of XP_001623545.2 in Nematostella vectensis

Genomic Location: NC_064048.1:10920652...10925259
NR annotation: XP_001623545.2, eukaryotic translation initiation factor 4E-binding protein 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001623495.3

CACTGTGCGAGTTTGTGTTTTGCTGGAAGGAAGAAGGCGAGCGAAAGCAGTCGTTGTAACAACTGAGGCTGACAAAATCGTAAATATCTCGCTCCAACGAACGAATTTAGAGCCATGAATGGAACACAAGCTGAACGAGGAAGCCCCCTTGCAAGAGCAATCCCTTCCAGACGTGTTCCTGTACATGATCCGAATCATATGCCCTCGGATTATAGTACAACTCCTGGGGGAACGATCTACAGCACAACGCCAGGAGGCACGCGTATTATTTATGAGAGGAAATTTCTACTTGAGTTGCGCAATTCACCTTTAGCCAAGAGTCCTCCCGCCAACCTACCGGTGATCCCTGGTGTCACATGTGAAGACAATGGAAAGCCAGAGCCAGAAGAGAAGCCAGAAGTGACTGCACTCCCTGGTGCCAGAGGCGAAGGAGATGGAGAGGAACCCCAATTTCAGATGGACATCTAGATCATTCTAAACCTGGTAATTTGGTTCAATGTCAATTAACATCAATCCCCGGAAAGTCATGTGATCACCGAGTGAAGGAAGCCCAGAAAGTTTGTAAATATaaggtctccctgtgtactcaATCTGTTTGGTGCTGCTAGATATGATTCTGTTGAAATTAGAGTTTTCATCTCTGCCATTTAAAAAATCGTATATCTCTTAGTGATTGGAACGATAACTAACTGCTAATGTAAAAATTCTCAGCTCTCTCAGATGCCTTGATTTTCATAAATTCTTTTTCTGCAAAAAGGTTGTGTGTCTGAAGCAGTTTTAGCATGTCAAATTGTGTGCCATTTGAATGTGATTATGGCATGTGCTTACACAACCTTTGTTGTATCAAGAGTTTGGGAAAGTTGGCAGCTTGAGCAACAAACAGTAGATACTATAAAAAATGAAGTACATACTAACTGACTTTTCTAATTTgtgaaattataattttttatgtGGTGGTATTTTGGAAATCAAGGATTTTTTGGGGAAAATGAGCATTATTGTTTGAATGCCATTTCCCAATAACCTTTTaacacttttctttctcttttacAAAACTTATCTCATGTTGAATTAAGGTTTTAGCAGTTGCCGAGGGTTGAGTTACATCCAGAAAGTATCCATCTTTGGTGTGAATAAGTGGATTACACAAAAACCAAAAATAATTagatttttattaaatatgtGAGTATAGTGTCTTACTATTCATATATAAATGTAATGTGTAATTTTCTGTTGATAGTTTCCCCTCTGTACATATATTTTCCATTAAGAGAGTTTATGTTAATCCGTCGTGAAAAACCTAACTAGCTGTAACTAAAGCTAAGTTGTATCATTTTATTATCCATTAGCTGCACTTAATACAAATGCACGCAATTGAACCAAGTTGATTATCATTTGTAGTATTTCATGGATATCATTTTTGTAATTCATGAATAATATCTTTAACATTTGAACTACAAGTGAAAAAAGTTGAGAGccctaaaagaaaaaaaaatcattaggAGAAAGTgtaaatttttctttttttgtggtCGGTCTCCAGACTCATTTCAAGTTCTAAAAGAGACATGCAAAGCATCATGGGTAGGTGTATGCAATTCACTATTGGAATTTGGACCTTCCCATGATTCTTTGCAAACCTTGTTCTTTAAAGGTGGTGGCTGCCAATTATTCATGTGAAGATGAAGATAAAATTTGAAGATacttaatattatttttttttttgggggggggggtgggttaGGTTGGATTTGACTGCCCCTGCCATTTTTGTTAGTGACGAGGTTTGAGGCTGGTAGGCTATGCCACAGTACTGGGCCACACCCATTTGTCCTTACCCCCACTCCTAGTATAACAGCATTATACTTAGAATACAACAATGTTCCATCCACCTTTTTAGATTGATTACTCTGCAGCCACCGTAGAATTGAAAGAATCCATTCAAAATAGTGGATggtatctatttatttttatgatgGGAGAAATGTATTGATTAATGTGAATATTCAAGTAAACACAGAATGCTAGCACTATTTTATGGTTGACGGAAAGCCTCTAAATTGTTTGAATACTGCGACTTTTATGTTGCTTCTGAATTCCATTACTTATGTAGTGATACAATTACTGATCTGTTATTAGATTTAACTGAATTAGTTATATAACTTTAATGTTTTCTTTGAATTAATTAGAATTGCTAAGCAGATCTTATTTTTCCATAGAAAAATCTTCATGGTAGATTATAAAGTCGTTGGTTTTTCTTGATAATAGACAATAAAGCTGTTACTTGTTTTCGAACTATGAATCGTTAAGCTGAGGATAGCTCGGTGGTCGTAATGACTGTACATAGATCAGATCTGTGTGGCCCAATAAACCTGCCACTTGACCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q60876	Eukaryotic translation initiation factor 4E-binding protein 1 OS=Mus musculus OX=10090 GN=Eif4ebp1 PE=1 SV=3
Q62622	Eukaryotic translation initiation factor 4E-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Eif4ebp1 PE=1 SV=3
P70445	Eukaryotic translation initiation factor 4E-binding protein 2 OS=Mus musculus OX=10090 GN=Eif4ebp2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008182 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05456 all species →	eIF_4EBP	Eukaryotic translation initiation factor 4E binding protein (EIF4EBP)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008606 all species →	Family	Eukaryotic translation initiation factor 4E binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12669 all species →	EUKARYOTIC TRANSLATION INITIATION FACTOR 4E-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0008190 all species →	Molecular Function	eukaryotic initiation factor 4E binding	Interproscan
GO:0045947 all species →	Biological Process	negative regulation of translational initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_001623545.2.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001623545.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

48TPM > 0

16Conditions

269.6Max TPM

152.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	3	105.45	120.19
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	96.30	121.28
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	126.84	160.30
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	167.43	186.76
whole 6 week old aboral regenerate · regenerate uncut	3	3	115.75	146.71
whole 6 week old aboral regenerate · regenerate 4hpa	3	3	181.25	211.80
whole 6 week old aboral regenerate · regenerate 120hpa	3	3	116.15	126.10
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	172.84	199.66
whole 6 week old aboral regenerate · regenerate 24hpa	3	3	191.79	222.81
whole 6 week old aboral regenerate · regenerate 20hpa	3	3	213.63	225.71
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	222.56	269.64
whole 6 week old aboral regenerate · regenerate 72hpa	3	3	114.85	147.94
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	128.94	137.99
whole 6 week old aboral regenerate · regenerate 48hpa	3	3	157.83	163.84
whole 6 week old aboral regenerate · regenerate 8hpa	3	3	137.67	166.10
whole 6 week old aboral regenerate · regenerate 12hpa	3	3	190.31	239.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	120.19
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	109.25
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	86.92
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	121.28
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	91.11
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	76.51
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	160.30
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	120.30
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	99.91
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	186.76
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	172.18
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	143.37
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	146.71
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	103.12
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	97.41
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	211.80
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	167.98
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	163.96
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	126.10
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	115.33
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	107.02
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	199.66
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	180.20
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	138.67
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	222.81
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	197.88
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	154.68
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	225.71
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	216.76
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	198.44
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	269.64
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	203.43
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	194.62
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	147.94
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	109.85
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	86.75
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	137.99
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	132.66
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	116.17
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	163.84
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	161.37
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	148.28
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	166.10
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	135.84
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	111.07
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	239.60
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	205.96
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	125.37

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.