Gene detail

Detailed information of XP_001623557.2 in Nematostella vectensis

Genomic Location: NC_064036.1:15970823...15975002
NR annotation: XP_001623557.2, rab GDP dissociation inhibitor alpha [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_001623507.3

TATTCCAATGTTTTGACGTTTCTTTCCGGCAAACAGCAGGATCAGTACCTGTGAGGCAGAAAATTGATTTCTCGAAAGAAACATCCCTAGTTTTCAGAAATCGCCATGGATGCAGAGTATGACTACGTGGTGTTAGGAACAGGTCTTAAAGAATGCGTTCTAAGTGGCCTTTTGTCGCTGAACAAGAAAAGGGTTCTTCATATGGATCGAAACAAATATTACGGTGGCGATTGTGCGTCGCTCCACCCGCTAAATCAGCTGTATGAGACATTCGGCCGCACCGATTTTCCCGGAGATTCGCTTGGGAAACCCAGAGATTATAACGTCGACTTAATCCCTAAGTTCCTCATGGCTGATGGTACACTAGTGAAAATACTCGTACACACGGGTGTAGCGACGAAATATATGAATTTCAAGCAGATCGAAGGAAGCTTTGTTTACCGTGGAGGGAGCGTCCACAAGGTCCCCGCAAACGAGAAAGAGGCTCTCAACTCTAGTCTTATGGGGATTTTCGAGAAAAGGCGCTTCAGGAATTTCCTCATTTTCGCACTAGGCGTCGAGCCGGAAAATGCTTCTACTTGGAAGGATTATGCAGGAGGGAATTTTGACCCAAAGAAGACCACTATGAACGATGTGTTCAAAGCGTATGATCTATCGCAGGACACTGCAGATTTCACGGGTCACGCTATCGCGTTGTACCGAGATGACGAGTACATGAGTAAACCCTGTGAAGAAGCAATCATGCGAATCAAGCTATATTACCAGTCCTTGTCCAAGTATGGAGGGTCCCCCTATATCTACCCAGTATACGGCCTGGGGGAGCTCCCCCAGGGGTTTGCCAGGCTGTGTGCAGTTTGGGGTGGCACCTACATGCTAGACAAAGCTATTGATGAGGTAATCATGGAGAATGGTGTCGTCAAAGGTGTTAAAACACAGGGTGAAGTTGCTAAGGCAAAGGTTGTAATTGGCGACCCATCCTACTTTCCAGACCGCGTGAGGTCTATTGGGAAGGTGGTACGATGTATTTGCATTCTGTCACACCCTATCGCCAACACCAATAACAAACAGTCATGCCAGTTGATTATTCCACAGAACCaagtcaacagaaattctgaCATCTACATCTGCTGTGTCTCACAAACCAACCTGGTCACTCCTAAAGACAAGTACCTTGCTATTGTCAGCACAACTGTTGAAACAGCAGATCCTGAAAAAGAGCTGGAACCAGGCTTAAAGCTTCTTGGGAAGATTGATGAAAAGTTTGTTTCTGTGAGCAATTTGTATGAGCCGCTGGATGATGGCACAGAAAGCAAGATTGTTATTTCCAAGTCTTACGATGCCACAACCCACTTCGAGACAACTTGTGACGACATTATGGACATGTACAAGAGAATCACTGGCGAAGAGTTTGATGCCAGCTGTATCGAAATCAAATTGAAAATGAAGGACTAGTAGTCTCGCAGTAGAGTATAAAATCTAATCTTAAAGATTTCAGATTCATTAATCGTACAAGGGTTGCATGTTAAAGGAACACTCTGGTATATGCAGCTTTTTAAAGCATTTTtccatttcttattgttttatcTGTCACTACTGGTATAGCTGAAATTTGTTGATATGTGATGGTTTTACCAGTTAGAAAGATATGATTTGATTTGTTCAGTATACTGTAGGTTGAACATTTGTGGAATTCTCAATGTACTGGGGCTTGAAGATTGACCTTCCCCTCTATTTGTTTAGGGCAATTTGCAGCAGTCAGAGTAGGTTGATTTCAGTTCAAATGtaaaatattcaaatatttcagagtttatttttaaaaatttattttatttatttatttatttactttataGAAATATACTACATGAGATGATATTTCTAGCTGAAGGGAAATTTATGAAATCGAATTTAATTACAAAGTATAGAATATCTGATTCAATCAGtggatttcaatatttttttaaaattaattaGTATCAAACAAATATTAATATGAAATAATGGTTTACTTTAGGGTAAATAATTTGTCCAGTAATGTTTAACTTCAAATAAATGCAGATATGTACTAAATTCA

Protein

Uniprot

Uniprot term	Description
P50398	Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus OX=10116 GN=Gdi1 PE=1 SV=1
P21856	Rab GDP dissociation inhibitor alpha OS=Bos taurus OX=9913 GN=GDI1 PE=1 SV=1
O97555	Rab GDP dissociation inhibitor alpha OS=Canis lupus familiaris OX=9615 GN=GDI1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00996	GDI	GDP dissociation inhibitor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR018203	Family	GDP dissociation inhibitor	Interproscan
IPR000806	Family	Rab GDI protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11787	RAB GDP-DISSOCIATION INHIBITOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005092	Molecular Function	GDP-dissociation inhibitor activity	Interproscan
GO:0005093	Molecular Function	Rab GDP-dissociation inhibitor activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0015031	Biological Process	protein transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17255	GDI1_2; Rab GDP dissociation inhibitor	-	Exosome	ko04147	deepkoala