Gene detail

Detailed information of XP_001624271.2 in Nematostella vectensis

Genomic Location: NC_064047.1:10706609...10712104
NR annotation: XP_001624271.2, protein misato homolog 1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001624221.3

TTACCGCTGGATTTATTGCTCGAGGTAactaaatccaagatggcggacgcaACGGTAAGAGAAGTGATTACTTTACAATTTGGACATTATGCGAACTTTGTTGGCACGCACTGGTGGAATATACAAGAGTCCTCATTTTGCTACGACGCAGCATCCCCTAAGAGTGAAATAAATCATGATTGCCTGTTCCGGGAAGGTTTGACGGTTACAGGCCAAGAAACTTACACACCTCGCCTTCTCCTGTATGATCTGAAGGGAAGCTTGCGAAATCTTTCAACCGAGGGACTCTTATACGAAGGCCCTTCCAAAAAGTACGTTGACTGGGAAGGAGAAATTACGATTTATGAAACAAATCCCGATCAAAAGAATGAATTTCAGGCAGATATCGAGAAAACTATGGTAGTGGAAAGTCAGGAATCTGGAATGGACTCCCAAACAGGAGATGCGACTGAGGAATTATCTGATAAAGTTTATAATCTCGATGATGAAATCGTTGTATGGTCTGATTTTCTAGGGACCCAATTACATCCACGTAGTGTAAACATAATAAATGAGTACTCGCATGATGCCGACATGTCTCCATTCAGTGTTTATGGCTATGGGCAGAGCCTATACAATGATGAAAGCTTCAGGGATAATTTTGAAGATGGGTTACGGTTCTTTGCTGAGGAATGTGATAGACTACAAGGATTTCAGATTCTTGCTGATGTCCATAATGGGTTTGGTGGGTTAATGTCACAATGCCTTGAAGATCTCCGCGATGAGTACAACTCCAAATCTATGATCACCGTGGGTTGTGTCCCTGCTCACTTTAAAGACACAGACCAGGAGCACAATGTGAAAAGGATTCTGAACATGGCTCTTAGCTTCAGCCAGATCACTGAGCATTGTGATTTGTTTGTACCTTTGTGCGTTAGCAAACAAGTGTGGCCAAAGCCAGGGACCTATGTGACATTCCCCTACCTTAACTATAAGGGTGAGTTGCCATACCACACTAGTGCCATCCTGGCCTCTGCTCTGGACACCTTTAGCCTACCATATCGCCTGGACACGCCTAAAGGGTGTGGCATGAGAGACCTGATCAGTACCATAGCTTTCAGTGGCAGGAACATCGCTCATGCTCATACAATGCTTCCTATTCCAGTCGGACCTCAGAAGAGCCTAGCTTCTCTGCTGAATGATTGCATAGAGAAAAGGCCTGATTCGATGCTGCCACTCACTCCTCACATCAACCAATCACAGAAGCTCATATCCCAAGCTGCTGTTTTGCGTGGCATTCCACAATCTCTGAGACATCACCCTTTAGGGAGTCCTAAGGCCAAGTCTATGTTTGGAAGCTCCAAGTCAAGCTGCGACATGTTGGATATGTATTTTCAGTCTATTAATCCCAACTCAGTCATCAAAAACTGGACATTGGATAAGGCTTTTGGAACAAAGGCACCTTATCCAAATATATTCAATGGTAGCGTCGGATCAGATGGACTGGTGTCTGAGGGGAGTGACAGAGGGGAGGGTCAAGCTAGAGAGGTTAAAGAGACAAGTGTGCTATCAGCACTTGGAATGTGTGCTGGGACAGGCGAGATGCTGGAATCATTGATTACCTGGTCTAACAAGGTGGATGTGCGGAAACACCATGAGTATTTAGAGAGTGGAGTGGAGTTTGATTtatataaagagaaaattgagAGCTTACTGAGTCAAGCCAATCTTTATAAAAATCCTTGATAGACAGTCGTTGATAATGAGACAGTCTTTGATAACTTGATAGACAGTCCTTGATAGGCAGTCTTTGATAATGAGACAGTCATTGATAATGAGACAGTCGTTGATAGACAATCATTGATAATTAATCAGTCCTTAATAATGAGTCAGTCCTTGATAGACAGTCATTGGTAATTAATCTTTGATATACACATTTTGATAATGAGACAGTCCTTGATAATGAGACAGTCCTTCATAGACAGTCCTTGATAATGAGAAAGTCCTTGATAATGAGACAGTCTTTGATAATGAGACAGTCTTTGATAATGAGACAGTCCTTGATATACAGTCATTGATAATTAGATAGTCCTTCATAGACAGTCCTCGATAATTAGACAGTCATTGGTAATGAGACAGTCATTGATAATGAGACAGTCATTGATAATTAGACAGTCCTTGATATACAGTCATTGATAATTAGATAGTCCTTCATAGACAGTCCTTGATAATTAGACAGTCATTGGTAATGAGACAGTCATTGATAATGAGACAGTCATTGATAATTAGACAGTCCTTGATATACAGTCATTGATAATTAGATAGTCCTTCATAGACAGTCCTCGATAATTAGACAGTCATTGGTAATGAGACAGTCATTGATAATTAGACAGTCCTTAGTATACAGTCATTGATAATTAGATAGTCCTTCATAGACAGTCCTTGATAATGAGACAGTCATTGGTAATGAAACAGTCCTTGATAATGAGACAGTCCTTGATAATGAGACAGTCATTGATGGTGAGACAGTAATTGATAATGAGACAGTCATTGATAATGAAACAGTCATTGATAATGAGACAGTCCTTGATATACACATTTTGATAATTAGACTTCTTCTGTAGTATAGTGTATGTGTGTACCTTCACTAGGTACCTTCACTAGGCACCAATAATGGGTCATTCCTTATTAAAGGATCGTCAAATAATTTcccttttccatatgatagcTATGGCTGGGCACACGCCCAGGTAGATGAGTTCCCAGCTGCTGGGTACCGCTTTATAGTAGGCATGATCCCTTAAAGGATTCGAAAAGGTTAGACAAGTCAGACTGGCGGGTCAAAAGACCGACAGGACAGATAGAGAAACTGACAGACagatataaatatataaagatAGTCGGTAGTCAGATCAGGGGAGTCAGTCAGCAGGGCTGTAATGTGCCTGGAAATATTGGGGTTAGGGGGGTCACAATACAGgcttattcagaaaaatggGAGGCACAGCAATAGCGGTACAGCACTGGTCATTCACTAAAAAAAGCTTAACATAGAGGCTACAAGATGGGTGACTTGACTGAGAGACGGAAGAGAGACAAGATTAAAACTCAAATTCAAGTTCTAAAGAGTACATCCATACAGCAAAACTTGCAGAGCGATGTGCCTATGCCAGGTCCACACTATACTATACAAATATCAGTCATGCAGGACAGCATCTTATTCATCACATCCATACAGCTCAGCTCACAGAGAGATGTGCCTATCCCAGGTCCACACTATACTATACAAATATCAGACAGACAGGACAGCATCTTTTAGATCACATTCATACAGCTCAGCTCACGCCTATGCCAGGTCCACACTATATTATACAAATAGCAGTCAGACAGATTCATGTTTACATCCATACAGCTCAGCTCGCAGTGAGATGTGCTTATGCCAGGTCCACACTATACTACATAAATATATATCACAGAGACAGAATCTTATAGGTCGCATCCATACAGCTCAGCTCGCAGGGAGATGGCGTTATGCCAGGTCTTAGCGATGATGCGGACGTAGCGTACTCTTGGGCGGTAGCGAAGCGGATGAGACACCACTTGTGTCTGGTCTAAGTTGCCAGCTAAGATCTGGAATAGAATTATCTATGAGTCCATACTATTTTAAGTAAACCTGGGTTGGGGGGCTAAAGGGCCAAGGGGTGTACTTTGTCTGTCAACTGGATAAAGCTGCACGATGTAAAATACTGAAAAAGAACCATAGCCATCCTTTTGGTCATTCTTTGATAGAGTAAATCGAAGGTATTTTCGTTCTTCCTTGTGAGCGCTATATTGTTACCTGGGATCATGTTTGTACCACAGACAAACCCGAAAAGCATTTAATAAACAGTGGTTTTCTTTCCATA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RF82	Protein misato homolog 1 OS=Pongo pygmaeus OX=9600 GN=MSTO1 PE=2 SV=1
Q9BUK6	Protein misato homolog 1 OS=Homo sapiens OX=9606 GN=MSTO1 PE=1 SV=1
Q1L908	Protein misato homolog 1 OS=Danio rerio OX=7955 GN=msto1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008027 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14881 all species →	Tubulin_3	Tubulin domain	Domain	Interproscan
PF10644 all species →	Misat_Tub_SegII	Misato Segment II tubulin-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036525 all species →	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR029209 all species →	Domain	DML1/Misato, tubulin domain	Interproscan
IPR049942 all species →	Family	DML1/Misato	Interproscan
IPR019605 all species →	Domain	Misato Segment II tubulin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13391 all species →	MITOCHONDRIAL DISTRIBUTION REGULATOR MISATO	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0007005 all species →	Biological Process	mitochondrion organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K27320	MSTO1, MST; protein misato	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_001624271.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

48Samples

36TPM > 0

16Conditions

3.5Max TPM

1.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole 6 week old aboral regenerate · regenerate 96hpa	3	2	1.92	3.50
whole 6 week old aboral regenerate · regenerate 144hpa	3	3	1.64	2.30
whole 6 week old aboral regenerate · regenerate 0hpa	3	3	1.58	1.79
whole 6 week old aboral regenerate · regenerate 2hpa	3	3	1.83	2.19
whole 6 week old aboral regenerate · regenerate uncut	3	3	1.51	1.77
whole 6 week old aboral regenerate · regenerate 4hpa	3	1	0.60	1.80
whole 6 week old aboral regenerate · regenerate 120hpa	3	2	1.56	2.55
whole 6 week old aboral regenerate · regenerate 36hpa	3	3	2.55	2.91
whole 6 week old aboral regenerate · regenerate 24hpa	3	2	1.17	1.98
whole 6 week old aboral regenerate · regenerate 20hpa	3	2	1.00	1.58
whole 6 week old aboral regenerate · regenerate 16hpa	3	3	1.53	1.92
whole 6 week old aboral regenerate · regenerate 72hpa	3	2	1.67	2.55
whole 6 week old aboral regenerate · regenerate 60hpa	3	3	2.45	2.86
whole 6 week old aboral regenerate · regenerate 48hpa	3	1	0.90	2.70
whole 6 week old aboral regenerate · regenerate 8hpa	3	2	1.53	2.34
whole 6 week old aboral regenerate · regenerate 12hpa	3	1	0.59	1.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR6320863	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	3.50
SRR6320836	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	2.25
SRR6320837	whole 6 week old aboral regenerate · regenerate 96hpa	whole 6 week old aboral regenerate	six weeks	regenerate 96hpa	SRP125570	0.00
SRR6320847	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	2.30
SRR6320838	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.33
SRR6320841	whole 6 week old aboral regenerate · regenerate 144hpa	whole 6 week old aboral regenerate	six weeks	regenerate 144hpa	SRP125570	1.29
SRR6320840	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.79
SRR6320846	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.54
SRR6320839	whole 6 week old aboral regenerate · regenerate 0hpa	whole 6 week old aboral regenerate	six weeks	regenerate 0hpa	SRP125570	1.42
SRR6320861	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	2.19
SRR6320842	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.76
SRR6320848	whole 6 week old aboral regenerate · regenerate 2hpa	whole 6 week old aboral regenerate	six weeks	regenerate 2hpa	SRP125570	1.54
SRR6320844	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.77
SRR6320843	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.70
SRR6320845	whole 6 week old aboral regenerate · regenerate uncut	whole 6 week old aboral regenerate	six weeks	regenerate uncut	SRP125570	1.07
SRR6320872	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	1.80
SRR6320849	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320873	whole 6 week old aboral regenerate · regenerate 4hpa	whole 6 week old aboral regenerate	six weeks	regenerate 4hpa	SRP125570	0.00
SRR6320882	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.55
SRR6320883	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	2.14
SRR6320850	whole 6 week old aboral regenerate · regenerate 120hpa	whole 6 week old aboral regenerate	six weeks	regenerate 120hpa	SRP125570	0.00
SRR6320855	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.91
SRR6320851	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.46
SRR6320852	whole 6 week old aboral regenerate · regenerate 36hpa	whole 6 week old aboral regenerate	six weeks	regenerate 36hpa	SRP125570	2.29
SRR6320854	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.98
SRR6320853	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	1.52
SRR6320856	whole 6 week old aboral regenerate · regenerate 24hpa	whole 6 week old aboral regenerate	six weeks	regenerate 24hpa	SRP125570	0.00
SRR6320860	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.58
SRR6320857	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	1.42
SRR6320859	whole 6 week old aboral regenerate · regenerate 20hpa	whole 6 week old aboral regenerate	six weeks	regenerate 20hpa	SRP125570	0.00
SRR6320880	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.92
SRR6320881	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.42
SRR6320858	whole 6 week old aboral regenerate · regenerate 16hpa	whole 6 week old aboral regenerate	six weeks	regenerate 16hpa	SRP125570	1.25
SRR6320865	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.55
SRR6320862	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	2.44
SRR6320864	whole 6 week old aboral regenerate · regenerate 72hpa	whole 6 week old aboral regenerate	six weeks	regenerate 72hpa	SRP125570	0.00
SRR6320869	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.86
SRR6320866	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.46
SRR6320867	whole 6 week old aboral regenerate · regenerate 60hpa	whole 6 week old aboral regenerate	six weeks	regenerate 60hpa	SRP125570	2.03
SRR6320870	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	2.70
SRR6320868	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320871	whole 6 week old aboral regenerate · regenerate 48hpa	whole 6 week old aboral regenerate	six weeks	regenerate 48hpa	SRP125570	0.00
SRR6320874	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.34
SRR6320875	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	2.23
SRR6320876	whole 6 week old aboral regenerate · regenerate 8hpa	whole 6 week old aboral regenerate	six weeks	regenerate 8hpa	SRP125570	0.00
SRR6320877	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	1.77
SRR6320878	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00
SRR6320879	whole 6 week old aboral regenerate · regenerate 12hpa	whole 6 week old aboral regenerate	six weeks	regenerate 12hpa	SRP125570	0.00

Source: CnidoSite RNA-seq expression matrices (NVECT_TPM, StringTie quantification over 48 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.