Gene detail

Detailed information of XP_001624420.1 in Nematostella vectensis

Genomic Location: NC_064042.1:13803420...13807361
NR annotation: XP_001624420.1, sodium/potassium-transporting ATPase subunit beta-1 [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001624370.3

TCTTCACCCGCCGGCGTTTGCAGCGTGGTTTTAGCAAGATGGCGTACGCACAGAAGTCCACGGAGGGAATGACAAGATGGGAAGTCATTGTACAAAATGCCAACGACTTCAAGACCTTTCTTTACAACAAAGAAAAGGGGGAGGTTATGGGAAGAAATGGTCAGAGTTGGGctaAAATCGGCTTGTTCTTCCTCGTATTCTACCTGTGTCTAGCCGGTTTTTTCGCCGCAATGTTGTCGATATTTCTTTCTACATTACCCGACCGTGCTGATGGGCCGAAGTTAACCCAATACATAGCCGGCAAACCTGTGTTGAACCCTGTTCCATCCAACAAGATCGAGGGTTATGATCCAAACAAGGCATCATCATACTCAAGTCATGTCAGTGACATCAACAGCTTTCTCAACCAGTATGTTAGACAAGGTGGAGCGAATAAAGACCAGTTTGCTCCAGATTTCTGCAATGGAACTTCAGGAGAACCTCGCCCTAAGGATGCTAAGAAGCAGTGCCGTTTTGATTTGACCAACCTTGGGCCGTGCTACAAGAATGAGACAGGATTCAAATATGGCTTTGACACTGGTTCTCCCTGCTTCTTTCTCAGGATGAACAAGGTCTTCAACTTTGTTCCTGAGCCAAACAGCGGATTGAGCTATATTAAAGTTGAATGCGATGCTAAGGACTCGAGCAAGAACAATCTTATTAAAGTTTACCCAGAGGAGAACCCTGGATGGCCTGTGTCCTTCTACCCATATCGTATGGAGGATAACTGGCTCGCCCCTGTTATTGCAGTCCAGGTGAACACCACTTCTACAACTGAAGTTCGCTGCAGAGCCTTGGGCAAGAATATACAACAAACAGACTCCTACCTTTTGAAACGTGGTGCTTACGGCAGAGTACGGATTGAGATTAACCCAGTGGATTAACCAAGTAGAACCTTTCTCAATGCATTTTGTTGAATTTGAGGGCCTCTTTGGGGATGTGAAATGCCATCAAACTTGTTTTAGACTTTTGTATGTTAACTACAAAATCGTTTTTATATCTGTGTAGCATTTTATACCTGACTTTGTGATTGCAATTCTCCAGGATGACTTTGTGatgtgtttattatttatgtcATGATCCTGTAGTGCTGTCGATTTTATAATAATGGAGTTTTTTGGAAAAGAGAATGGCAATCAGTGGTTATAGGAAATATGCTGCTTCAAGTTACAAATTTTGAAATTGTCTTATTCAAACTTACAACTGAACAATTTGCTTCTTTTCTCAATTTTCTTTGTGGCTGTACATTCTTGATAATTAATGTCTTTCCAAGCGGTGTTGAGGGAGATTGTATAATGTCATTgaatttcatttcctttattcAATCATCTTGGTCAGCTTGACTGTTAAACATACTTTGAGTTGTGCAATTATCAGATTTGAAAAATTATTTGCTTAAAACTGATGTCCATATGACGTTGATTGTACATATAGTACAGTTATTTCTAATATAATCCTAGTTTACTTCAATTGCCACCTGTTCGATAGACATTTGTTTTGTACTTTACTAGTACACTTTTCATTACTAGACTATTGATTTTCTTTATTCGCATGAGTATGTGTTTGAGGCCACCACTTCACAAGAAATTCTTGGGAAACTCAGAACATTTCTTGTATTTTTGGGGGCTGGCAGAACTGCATTTTAAATAACTCTAAAGCACCAACGGATGTATTTCCAGTGTAATAAATATTTGTTCTTAATATGTTACTACTCATCAAGGCCTGCTGCTACAAGCAACTATTCTACCAGTTTTGAATCTTAGGATTTtcaaattgtgagaaaacaactcTTATGGTTTCAGTTAGCTTCCGGAAGTGTCAGTTATTGCGTCAGAGCCATCCAGGGTTGTAATACAGTGGAACATATGTAAGGTTGAAAGAATGTAAGATCTCTGAGTAAGGCAAGAGCTAGCTGTAGTGGTACAATCAACACTTCAAGTAGCATGTTTGCACCCGGTTTCAAAATGCTTTGTAGTAGTGTTGTTATACAATAGGTATTTTGAAAGCGGATACACAGGCTATAACTCTAGCAGTAGCAATTTTGTACTTGAATGCTGTGCTTGAAGCAATGAATAAAAGCTATTGGTGCA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08251	Sodium/potassium-transporting ATPase subunit beta-1 OS=Gallus gallus OX=9031 GN=ATP1B1 PE=1 SV=1
P51165	Sodium/potassium-transporting ATPase subunit beta-1 OS=Anguilla anguilla OX=7936 GN=atp1b1 PE=2 SV=1
P30716	Sodium/potassium-transporting ATPase subunit beta-3 OS=Rhinella marina OX=8386 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006491 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00287 all species →	Na_K-ATPase	Sodium / potassium ATPase beta chain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000402 all species →	Family	Sodium/potassium-transporting ATPase subunit beta	Interproscan
IPR038702 all species →	Homologous_superfamily	Sodium/potassium-transporting ATPase subunit beta superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11523 all species →	SODIUM/POTASSIUM-DEPENDENT ATPASE BETA SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005890 all species →	Cellular Component	sodium:potassium-exchanging ATPase complex	Interproscan
GO:0006813 all species →	Biological Process	potassium ion transport	Interproscan
GO:0006814 all species →	Biological Process	sodium ion transport	Interproscan
GO:0001671 all species →	Molecular Function	ATPase activator activity	Interproscan
GO:0006883 all species →	Biological Process	intracellular sodium ion homeostasis	Interproscan
GO:0030007 all species →	Biological Process	intracellular potassium ion homeostasis	Interproscan
GO:0036376 all species →	Biological Process	sodium ion export across plasma membrane	Interproscan
GO:1990573 all species →	Biological Process	potassium ion import across plasma membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01540	ATP1B, CD298; sodium/potassium-transporting ATPase subunit beta	-	CD molecules	ko04090	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.