Gene detail

Detailed information of XP_001624451.1 in Nematostella vectensis

Genomic Location: NC_064039.1:1403474...1405706
NR annotation: XP_001624451.1, PWWP domain-containing protein 2A [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

rna-XM_001624401.3

ATGGCTAGTTTTAAGGTTGGAAGCATCGTTTCCGCCACAGTTGAGCAAGCCTTAGAGAACTGTATCATGGTTAAATACAAAAGGGGCTCAAGGACCTTCCGAGGGGTTTTATTTGACGAGAAAAACTCAGTTGTTTCAAGgatACCTTTGAAAGATGAAGAAAGTAGACAAAAAATGGCTACCAATACCTTACCTGCTAGAATGGCTGTGGTCTCACCATCTAAAGCCACATACTCGTCGTTACGATCACGGGCATGTACTTTAAATAACAGGAGGGGCATTGTTAACCTAAGTCCCAAGCCAAGGACCCTAAGACATGAGAAGACAAGTAATGGGAGCAAGAAAGGCAACTCTTTACCTTCCCAAAGTACATCCTTAAAGAGCTCTAATCCTTCTAAGAAATTCAGCCACGCTACTAGAGACATTGATAAGGTAGTTGAGAATAAGAATGGAAAATCTCAGGGGGTAGGAGGAGGGTTGAAAAGGTCAGCTCCAACTGAACTAGTAAATAACAAACCATCCAAGGCAGTCAAGACTGGGCAGGAGACGGTTGGAGACTCAAGCAGGGCAATCATAAAGAAATCAAGGGTTAGGCAAAGAAGTGACGAATCAACAAACATGAGAGAAAGACTCGGGGATAGCACACAGACTGGCTTTGAAAGGGACAGTTTGCAGCCTGGTCATTTCCTCAAGACAACACCCTCtatggaagatgaaaatgtaGTATTTGGTGTAAATGGGTCAGATGTTGTTGCTAATAGCTCCAGTGGAACAGTGAAAAGAAGTCTATTTCTTCCCGAGGTGATGGAAGAGAATGACTCTGTATTCAGAGATGATGTCTCTCACAGCTCTTCGTCTCTAACAAatgaggaaacagaggttaaTCTTTACTGTGATGAGCCCCCAGTAGATGTGTTTTTGACTTCACTGGGGCTAGATCATGAATTAACAGACAACAAGAAAGATGGCTCTAAGACTAAAGATAACTTCCCTGTAATTGATTCCCCTGTGTCAAATTCAGATGAGATAAGTGAGCCAACTGATAAAACAAGTGATGATACTGTTTTAACACCAGTCAAAAAATCTGCAAGAATAAGTGCTAAGCGGGCAAAACTAGAGGAAATCGGTATAAACGATGAAGATGACAAAACTACCATATGGAGCATTTGGGGGGCATCTCCAGTGAAAAAGGAGCAAAAACAATCAGAGACTGGATCAAGGAAACATTCTGACACTGATTCCACACATTTAAAATTATCCAGCACTGAGACCCATGCTAATCAACCTACGGTTATTGAAGATTGTAATGCGGCATCAATAAACGAGGGGAGTATTATATGGGGCAAGGTGCATGGGCACCCTTGGTGGCCTGGAAGGGTGATGGCTATCACAGAGGTTGTAGATGACCAGGGGGGTGTGGACACATTTGCTCATGTCACTTGGTTTGGTTCAAATACAAGCTCAGAGATGCCTGTACAAGAATTACAGGATTTTGAACCAAATTTCCGCCGGCGATACAAGAAAGACAAAAAGGGATGTTACCGCAGGGCAGTTCGACAAGCCCAAGAAACACTAACAATTATGAAATTGGGTATTTGAACAAGAAAAtttaatttaaaacaaaaaatgttcCTAACTGTATTGTTGTAAGGAGCTTGGATCAAATTTAAATCTTAGTTTACAGTAGGTGTCTATAATATTTTATGTTCCTTGTTGTGTTAAAAATTGTACCATAATTTATATAAGAAATTGTAAATATTGAGCTGCAAAGCAGTGGCTCTTAAATTTGAGTATTGAATTTCTATTATCAAGAAAAATTATTAtacaaaatgataataattcaTTATTTATAGTAGAACTgcaaagataaaaaaacataatgttgtataaagaaaataatagaGCAGAACCAGTCAATTTCAGGAAGTTGTAAAacgcttgttatgtaaaataCTTTAATTTGGTATGGTTCAGTTGTTTTGTTAATGTTAAATAGCTTGTGGTTAAAATTCAAAATGACTTTGGATGTTACACAAAATAAATGCAGAAGGCACTA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
E9Q9M8	PWWP domain-containing protein 2B OS=Mus musculus OX=10090 GN=Pwwp2b PE=1 SV=1
Q6NUJ5	PWWP domain-containing protein 2B OS=Homo sapiens OX=9606 GN=PWWP2B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009334 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00855 all species →	PWWP	PWWP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000313 all species →	Domain	PWWP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16112 all species →	METHYL-CPG BINDING PROTEIN, DROSOPHILA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0010369 all species →	Cellular Component	chromocenter	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_001624451.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.