Genomic Location: NC_064042.1:916515...924596
NR annotation: XP_001624802.2, translationally-controlled tumor protein homolog [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5503852 |
| Transcript |
| rna-XM_001624752.2 |
| Protein |
| XP_001624802.2 |
| UniProt accession | Description |
|---|---|
| Q95VY2 | Translationally-controlled tumor protein homolog OS=Branchiostoma belcheri OX=7741 PE=2 SV=1 |
| P0CR83 | Translationally-controlled tumor protein homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=CNBM1320 PE=3 SV=1 |
| P0CR82 | Translationally-controlled tumor protein homolog OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=CNM01460 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006750 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00838 all species → | TCTP | Translationally controlled tumour protein | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR011323 all species → | Homologous_superfamily | Mss4/translationally controlled tumour-associated TCTP | Interproscan |
| IPR011057 all species → | Homologous_superfamily | Mss4-like superfamily | Interproscan |
| IPR018105 all species → | Family | Translationally controlled tumour protein | Interproscan |
| IPR034737 all species → | Domain | Translationally controlled tumour protein (TCTP) domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11991 all species → | TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005509 all species → | Molecular Function | calcium ion binding | Interproscan |
| GO:0005737 all species → | Cellular Component | cytoplasm | Interproscan |
XP_001624802.2.Transcript abundance of XP_001624802.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 7,303.22 | 7,880.14 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 7,566.67 | 8,302.38 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 8,573.45 | 8,857.35 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 8,509.50 | 8,602.52 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 8,442.84 | 8,949.39 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 3 | 8,614.30 | 9,566.14 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 3 | 7,976.70 | 8,609.59 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 8,040.39 | 8,523.88 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 3 | 8,057.68 | 8,288.50 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 7,779.32 | 8,843.69 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 8,138.13 | 8,378.99 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 3 | 7,652.97 | 8,205.38 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 7,763.55 | 8,330.90 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 3 | 8,374.97 | 9,660.26 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 3 | 8,144.52 | 8,453.36 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 3 | 8,553.75 | 9,373.54 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
