Genomic Location: NC_064035.1:4975965...4980084
NR annotation: XP_001626437.2, ATP synthase subunit beta, mitochondrial [Nematostella vectensis]
Species Nematostella vectensis · all data for this species · gene families
| CDS |
| LOC5505694 |
| Transcript |
| rna-XM_001626387.2 |
| Protein |
| XP_001626437.2 |
| UniProt accession | Description |
|---|---|
| Q05825 | ATP synthase subunit beta, mitochondrial OS=Drosophila melanogaster OX=7227 GN=ATPsynbeta PE=1 SV=3 |
| P99504 | ATP synthase F(1) complex catalytic subunit beta, mitochondrial OS=Canis lupus familiaris OX=9615 GN=ATP5F1B PE=1 SV=2 |
| Q5ZLC5 | ATP synthase F(1) complex catalytic subunit beta, mitochondrial OS=Gallus gallus OX=9031 GN=ATP5F1B PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003927 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF02874 all species → | ATP-synt_ab_N | ATP synthase alpha/beta family, beta-barrel domain | Domain | Interproscan |
| PF00006 all species → | ATP-synt_ab | ATP synthase alpha/beta family, nucleotide-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005722 all species → | Family | ATP synthase, F1 complex, beta subunit | Interproscan |
| IPR004100 all species → | Domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain | Interproscan |
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR050053 all species → | Family | ATPase alpha/beta chains | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR036121 all species → | Homologous_superfamily | ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily | Interproscan |
| IPR024034 all species → | Homologous_superfamily | ATPase, F1/V1 complex, beta/alpha subunit, C-terminal | Interproscan |
| IPR020003 all species → | Active_site | ATPase, alpha/beta subunit, nucleotide-binding domain, active site | Interproscan |
| IPR000194 all species → | Domain | ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15184 all species → | ATP SYNTHASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0015986 all species → | Biological Process | proton motive force-driven ATP synthesis | Interproscan |
| GO:0045261 all species → | Cellular Component | proton-transporting ATP synthase complex, catalytic core F(1) | Interproscan |
| GO:0046933 all species → | Molecular Function | proton-transporting ATP synthase activity, rotational mechanism | Interproscan |
| GO:0046034 all species → | Biological Process | ATP metabolic process | Interproscan |
| GO:1902600 all species → | Biological Process | proton transmembrane transport | Interproscan |
| GO:0005753 all species → | Cellular Component | obsolete mitochondrial proton-transporting ATP synthase complex | Interproscan |
| GO:0042776 all species → | Biological Process | proton motive force-driven mitochondrial ATP synthesis | Interproscan |
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K02133 | ATPeF1B, ATP5B, ATP2; F-type H+-transporting ATPase subunit beta | EC:7.1.2.2 | Diabetic cardiomyopathy | ko05415 | deepkoala |
Transcript abundance of XP_001626437.2 across 48 RNA-seq samples of Nematostella vectensis. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole 6 week old aboral regenerate · regenerate 96hpa | 3 | 3 | 795.38 | 923.21 | |
| whole 6 week old aboral regenerate · regenerate 144hpa | 3 | 3 | 756.47 | 886.79 | |
| whole 6 week old aboral regenerate · regenerate 0hpa | 3 | 3 | 1,037.62 | 1,120.84 | |
| whole 6 week old aboral regenerate · regenerate 2hpa | 3 | 3 | 978.24 | 1,027.01 | |
| whole 6 week old aboral regenerate · regenerate uncut | 3 | 3 | 903.29 | 1,032.73 | |
| whole 6 week old aboral regenerate · regenerate 4hpa | 3 | 3 | 898.13 | 944.74 | |
| whole 6 week old aboral regenerate · regenerate 120hpa | 3 | 3 | 839.95 | 872.99 | |
| whole 6 week old aboral regenerate · regenerate 36hpa | 3 | 3 | 791.24 | 891.19 | |
| whole 6 week old aboral regenerate · regenerate 24hpa | 3 | 3 | 813.97 | 845.35 | |
| whole 6 week old aboral regenerate · regenerate 20hpa | 3 | 3 | 830.11 | 898.27 | |
| whole 6 week old aboral regenerate · regenerate 16hpa | 3 | 3 | 894.09 | 945.16 | |
| whole 6 week old aboral regenerate · regenerate 72hpa | 3 | 3 | 776.48 | 815.94 | |
| whole 6 week old aboral regenerate · regenerate 60hpa | 3 | 3 | 750.12 | 769.70 | |
| whole 6 week old aboral regenerate · regenerate 48hpa | 3 | 3 | 851.25 | 1,001.96 | |
| whole 6 week old aboral regenerate · regenerate 8hpa | 3 | 3 | 974.77 | 1,041.17 | |
| whole 6 week old aboral regenerate · regenerate 12hpa | 3 | 3 | 947.37 | 1,049.87 |
Source: CnidoSite RNA-seq expression matrices (NVECT_TPM,
StringTie quantification over 48 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
