Gene detail

Detailed information of XP_001626962.2 in Nematostella vectensis

Genomic Location: NC_064042.1:9539743...9547986
NR annotation: XP_001626962.2, nuclear factor NF-kappa-B p100 subunit isoform X1 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_001626912.3

gaaatctgattggctattgaTGAGGCTCCCTTACAAAACGACACAGCCAAGCACAAGAGAATGTCTGTTCTCTTTAGTGAATATTGGAGATTTATGATCATATTCATAGCCTATGTTAACGTTTGAACGCAGTTCACATATAGAAGCATTTAAGCTCTACTAGACATCGTGGCTTTGATTCCACAAGCTTTGAAACTGGGTCTATTATGTAATGATGGTCGCTGTGTGCCGAGGGACGAAAGCATTTGGATGTAGAATAAGCTAAACTTTCTGCAGTTTAGATATGAGGTTTGTATTTTCGGTATCAGATACTAGGTCTGGAAGCTTGTTTTATCATGGTAAGACCTAAACGACTATCCAAAAGGAAGCCAACACGCTATGGATATTCTACTCCGCTAGCCAAGTCAAATATTACTCGAGCCGAAACTAGTGACGGTGCATCAAAATCAACATCTGAAGAACGCAAGCTTACAAAGGTGGGAAATGCTTTGAAAGGAAAACCTCGTAAGCGGAAAATTTCATCCGAGGAAGGAAGCCCAGGACCCCCTCTTAGTGGAAGGGGTGAAGAAAGAGAATTCAAAACCACAGGCCCCCCGGTAACAACCGATTGTCAAACAATCGACCTGAATAAGCCGAACAAGAATCTTTCCGAATCACGAGAAGATGTGATAGTCGACCTTAAAAAAGAGATAAAAGAAAGTACTAAAGTTGAAGCAAGTCAGTCTGCTAGCTTTGTTGAATCTGAAAGGTTGGGACCAAGACCATCTGTCATTGCTGTTGGGAGAATCTCGGGGGCTTTGGataaaaagagaaagaaaacacATAAGGTGCAAAAACATACATCCAGTGAATCATCAAAACAATCAGAACCAGTAACTTTTGTCATCAACCTTGATAAATCAACTAGAAAGACATCTAGATCCTTGAAAAAATCAACCAAAGAATTAACAATTCCAGTTGCATCAAAGACTTATCCCAAAGCTAGCAAGacagacaaaataaaaaaatcccatGAAACTGAGAAATGCGAAATTCTTGAACTAAGCAATCTAACAGGGGGAGCAAATCAAAATGTCTCAGAATCACCTGGTGTGGAAGAGCCCTCCGATGTGACATGGTCATATGAGAAAAGCGTGAGTGACTTATGCCAAGCTATTCCTAAACATGACCCTAGGCTGTTTAGTCAAGACGAAGATGGTGACACgTACTTGCACATCGCCATAGCACAGGGTGACAAAAATCTTGTCTCTTACTTTATAAGAGAGATGCATCACGTGACCTTGAACATCTACAACAAGCTTAGACAAACCCCTCTTCATCTCGCAGCCATCACGAAACAAGCGAGCCTGGTGCAAGCATTGCTGGAAGCGGGTGCAGATCCGAACCTCACTGATCGTAACTGCCAGACTGCGTTACACTTGGCATGCCAGGAGAATGATGTAGAGACCCTACGGGCCATAGGTCACGCATTCTCGAGCTGCTCCCAGGAGCCAGATGTGAGAGCTATGAACTCGCAAGGCATGACTCCGTTACACTTGGCGACTCTAAAGGGCAATCGCGAGCTGATTACGGAGCTACTGCGCATGGGCGCAGATTTAAACGTGGAGGATGGCAATAGCGGCAGAAGCCCGCTGCATCATGCGGTAGAGTCAGGCCGTTATCACGTGATCGAGTTCCTCTTGTCACGTGGCGCCCTCGTGAACCAGCGCACGTTTTCTGGTAACACTGCCATGCACACCGCCGCCGGTCGACAGATGGATGAAGTCGTGTCTCTACTCGCGAGTTACGGCGCCGATGTAAACATCCAGAACAGAGAGGGGGACATCCCTCGCGTGGCTTATGCAGGAAGTGATAGGGAAAGAAAGCAGATCGCGTTTTCTCGCAGCTTACCGAAGCAACCAAAGCGGCAAAAGGTTCCCGACACGTGAGTCTGTGAGTATTGTGGGAAAAACTCCCAAATGGAATCCCCATAAATTGACCGTTTTCCAGGTAACGGGGGTCCTGTGGAGCGTGAAAGCGAGGCTTTGTCTGGTTGGAGAGCTGCGCGACCGTCGACTTACGATAAAGCTTGAGGTTAAACAGCTAGTTACAACAGACTGAAATGTAGTTAAACTtagtaagaaaaaatatgcaaatatTTGCGAGATGCTGCCGGAAAAATCCTGGCTTTTGCGCGAAAATCATCTGAAAAACGCCCCATTACTGCAAGTACAGAAGAATCACAGCCGACGACCAAGCTCTTGGTAGCACGTTAAGCCATGCAAAGGACAAATAGTTTCGTTTTTCAGTTGTTTATTTGAATCAATATTGGTAAGAATAGCGTAAATATACGATTTTTTCTAATGATACACACCAACTTTTCTGCGTCCAATAAATAGAAAGTTTACTTTTACACATAATGCTATTtacattgtgtttttgttaaaattCCACCGTTTAAACATTTTGTTTAATGTACAAATAGATactcattgtctaagctaccATATAGTGTAACTTATGTGATAAATTGCGTAAAAATATGTTATGAATTAATAAAAGTTTATTATCATG

Protein

Uniprot

Uniprot term	Description
P20749	B-cell lymphoma 3 protein OS=Homo sapiens OX=9606 GN=BCL3 PE=1 SV=2
O00221	NF-kappa-B inhibitor epsilon OS=Homo sapiens OX=9606 GN=NFKBIE PE=1 SV=3
O54910	NF-kappa-B inhibitor epsilon OS=Mus musculus OX=10090 GN=Nfkbie PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00023	Ank	Ankyrin repeat	Repeat	Interproscan
PF12796	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR051070	Family	NF-kappa-B Inhibitor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46680	NF-KAPPA-B INHIBITOR ALPHA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005829	Cellular Component	cytosol	Interproscan
GO:0007253	Biological Process	cytoplasmic sequestering of NF-kappaB	Interproscan
GO:0051059	Molecular Function	NF-kappaB binding	Interproscan
GO:0071356	Biological Process	cellular response to tumor necrosis factor	Interproscan