Gene detail

Detailed information of XP_001627594.3 in Nematostella vectensis

Genomic Location: NC_064045.1:14922204...14928250
NR annotation: XP_032231265.2, uncharacterized protein LOC5506887 isoform X2 [Nematostella vectensis]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC5506887

ATGAGTTTTGAAAGCCAAGGATTCCGTGTAGTTATCCCTGGTGGTTACCCTTCAGTGCACGTGTGTAAAGCGCCGTATTCCTTTGCCAACAGCACTAACAACACTACTAGTATAGTGATCTCAACCAGGACTACCTCACTGGAAGATGGAAGTGACTCAGAGATTGAATACACTGAAGCAATTGAAATCCCTCTACTGCCGAAGCGCCGCAGAAGTCGAACTAACTTTGACTCCTGGCAGCTGGAAGAGTTGGAAAAGATCTACCACCATAACCAGTACCCGGATGTGTTCACGCGAGAAGCCCTGGCACTGAAACTCGACCTTCTCGAGTCTCGAATACAGGTCTGGTTCCAGAATCGTCGTGCTAAAATGAGACGAGAAGAAAAAGTGAAAGCTGTGCCGGGAAGACGGAGGAAAACCGAGGCCGAGCGAGCAAACAAAGAGTACCTTCTTTCCTCTTCCGGCGAGACCTCTATTAGCCCCACCCCACCCCCAAGAAAACAAAGCAACCATTCAAACTCCTTCAGCATTGAGAGTATCCTCAGGCGCAAGGATCCCCCGAGAGGGGAGGTGTCAGTCATGGAAAAATTATCCAGCTTAGTCGACGGTATACCTGTGGTGGATATTGAGGAAAATGAGGAACTGGAACGGAACGCTGGGAGTCATAACGTTGTTGGTATTCCATCAATGTTTGAAGAAAGGCGTGCGGAAGGTATTCATAGAAGCACAGACGTGCGAATTAGGGAGGAACGGAACGGGACGCCGGATTGTACAGAAAATTATTCAGGCAATGGAACCTTAGGAGCTCTGTCAAAAACACAAGACACGTCACGCACACATGTCACACAATACGCGCCGTACACGCATGTCACGAAACATCATCCACGTGATAATACACGCAAAGACACATCACCACATACAAGTCACCAACCGGAAGTAAACACAACTGAATTTTTCACTCAGTCACAACCGGAATTAGCTGTATCCAGGAAATCCCCTATAGCTGCGCCTGTTCCACTCAGAGTAGGTCAGCGGCACTTAGACTCGTACGCATGCGTTACATCAACGCTTTCCTACGAACAAACAAGCACGAGAAGACTTGAAACTAGGAATGAAGAAATGAGGTCACGACAAGCTCTACCATTACCTGGGGACGAACAAACGAGGTCGCGACCAGCTGAAATCGCACCTAGGGACGAACAAATGAGGTCAACAAGGTCGCACATTGAGGACGAGAGGGCGCAATTCGTCTATATAAGGTCGCAAATGCAGTGCAATAGCAAAATCATGCGGAGTTCACGGATCGCGGCTGACAAAAGGCGTTTAAATGGAGCTTCATGTATAGGAAGCGTAGAGCCGTCCACATCGCAGCAAAGCGCGCGACCAGAATGTGCATCACATTATTCGGATGACGAAGATTTGCCAGTGACCGCGCGAACATTGACCGCAGGACCATGTAATAGGGATTTAATACCGGAACAAACTCGACCAGGAAATAAGAGGGCGCGTCGTGAGGACGAGGAAAAGCAATCTGTCGGCGAGAAGACCGCGGATATTCCACTCACGCATTACAATTTTAGGCCTTCACGCCGACACGAGCTTAGAGAAAAAGAGGGTGGCGTGACTGATACAGATTTGCTTAATCGAGAGGGTGACATGGAACTAGATAAGAGCAAGAGGGTAGGGATAGTTAGACATGAGCTTGAAGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAAACAGGAGAGTGGGGATAGTTAGACATGAGCTTGCTGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAGACAGGAGAGTGGGGATAGGTAGACATGAGCTTGATGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAGAAAGGAGAGTGGGGATAGGTAGACATGAGCTTGATGGTATCCCTGTGGCACAAAGCGAACGAGGTGAAGACAGGAGAGTGGGGATAGGTAGACATGAGCTTGCTGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAGACAGGAGAGTGGGGATAGGTAGACATGAGCTTGCTGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAGACAGGAGAGTGGGGATAGGTAGACATGAGCTTGATGGTATCCCTGTGGCACAAGGCGAACGAGGTCAAGAAAGGAGAGTGGGGACAGGTAGACATGAGCTTGCTGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAGAAAGGAGAGTGGGGACAGGTAGACATGAGCTTGCTGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAGACAGGAGAGTGGGGATAGGTACGCGTTTACTTGGCGAATTTGAAAGCTTTCGATCATCAAGTATCTTAGCGTTGAGAACCCGCGCAGAGCAGCACATGAGGCAGCTGAATGTCTGCTAG

Transcript

rna-XM_001627544.3

AGACAGTTGTGAGTGACAGCTTGTTACCGACTGTAAATGGTTTGTAATTTCATTCCTCGCGAGTTTTCATTGCTAACAAGGCGCTTACAGCTTACAAGTCAATCGAGCTCAACCCGACAAACTCAAAGATACCCGCTAACAAGACAGACATCCCCATTTGGAAAACAACTTGTACGTTGATTTAATGGCTTATTGGACTGGCCCAAACTCGACGAAGGAGTCTACCTTGTAGCGATGAAGAATCGAGAGAAAATCCCTTGGAAAGTAAGACAATCCTCAAGCACATTTTGCTGATGAACCCAAAATGTTGGTGGTATCAAAGACGTAGTTGGGCCTACATCTTAAACGGAACATACTGACGATCTTCTGTCTACGATCCAAGGCCGATGACTTAGGGAATATCTTGTGATTCGCTCGACTTAAATCCCAGAGAGGTCTTGGGCCGGTCAGCACAGATCGCGTAAAGAGCCGAAGATCGCCTTGTCTGTACGTCTATCAAAACCTTCGCAAGCCGCATACGCCGGTTGACAATCAAACACAGAGTTTGTCTGAGAGCCCAAAGTCATCTTAATAGGACTTTGAGGACTTCTTGACACCAAGAGAACCCGCTAAGTCACTCGCGATGAGTTTTGAAAGCCAAGGATTCCGTGTAGTTATCCCTGGTGGTTACCCTTCAGTGCACGTGTGTAAAGCGCCGTATTCCTTTGCCAACAGCACTAACAACACTACTAGTATAGTGATCTCAACCAGGACTACCTCACTGGAAGATGGAAGTGACTCAGAGATTGAATACACTGAAGCAATTGAAATCCCTCTACTGCCGAAGCGCCGCAGAAGTCGAACTAACTTTGACTCCTGGCAGCTGGAAGAGTTGGAAAAGATCTACCACCATAACCAGTACCCGGATGTGTTCACGCGAGAAGCCCTGGCACTGAAACTCGACCTTCTCGAGTCTCGAATACAGGTCTGGTTCCAGAATCGTCGTGCTAAAATGAGACGAGAAGAAAAAGTGAAAGCTGTGCCGGGAAGACGGAGGAAAACCGAGGCCGAGCGAGCAAACAAAGAGTACCTTCTTTCCTCTTCCGGCGAGACCTCTATTagccccaccccacccccaagaaaacaaagcaaccATTCAAACTCCTTCAGCATTGAGAGTATCCTCAGGCGCAAGGATCCCCCGAGAGGGGAGGTGTCAGTCATGGAAAAATTATCCAGCTTAGTCGACGGTATACCTGTGGTGGATATTGAGGAAAATGAGGAACTGGAACGGAACGCTGGGAGTCATAACGTTGTTGGTATTCCATCAATGTTTGAAGAAAGGCGTGCGGAAGGTATTCATAGAAGCACAGACGTGCGAATTAGGGAGGAACGGAACGGGACGCCGGATTGTACAGAAAATTATTCAGGCAATGGAACCTTAGGAGCTCTGTCAAAAACACAAGACACGTCACGCacacatgtcacacaatacgcGCCGTACACGCATGTCACGAAACATCATCCACGTGATAATACACGCAAAGACACATCACCACATACAAGTCaccaaccggaagtaaacacAACTGAATTTTTCACTCAGTCACAACCGGAATTAGCTGTATCCAGGAAATCCCCTATAGCTGCGCCTGTTCCACTCAGAGTAGGTCAGCGGCACTTAGACTCGTACGCATGCGTTACATCAACGCTTTCCTACGAACAAACAAGCACGAGAAGACTTGAAACTAGGAATGAAGAAATGAGGTCACGACAAGCTCTACCATTACCTGGGGACGAACAAACGAGGTCGCGACCAGCTGAAATCGCACCTAGGGACGAACAAATGAGGTCAACAAGGTCGCACATTGAGGACGAGAGGGCGCAATTCGTCTATATAAGGTCGCAAATGCAGTGCAATAGCAAAATCATGCGGAGTTCACGGATCGCGGCTGACAAAAGGCGTTTAAATGGAGCTTCATGTATAGGAAGCGTAGAGCCGTCCACATCGCAGCAAAGCGCGCGACCAGAATGTGCATCACATTATTCGGATGACGAAGATTTGCCAGTGACCGCGCGAACATTGACCGCAGGACCATGTAATAGGGATTTAATACCGGAACAAACTCGACCAGGAAATAAGAGGGCGCGTCGTGAGGACGAGGAAAAGCAATCTGTCGGCGAGAAGACCGCGGATATTCCACTCACGCATTACAATTTTAGGCCTTCACGCCGACACGAGCTTAGAGAAAAAGAGGGTGGCGTGACTGATACAGATTTGCTTAATCGAGAGGGTGACATGGAACTAGATAAGAGCAAGAGGGTAGGGATAGTTAGACATGAGCTTGAAGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAAACAGGAGAGTGGGGATAGTTAGACATGAGCTTGCTGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAGACAGGAGAGTGGGGATAGGTAGACATGAGCTtgatggtatccctgtggcaCAAGGCGAACGAGGTGAAGAAAGGAGAGTGGGGATAGGTAGACATGAGCTtgatggtatccctgtggcaCAAAGCGAACGAGGTGAAGACAGGAGAGTGGGGATAGGTAGACATGAGCTTGCTGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAGACAGGAGAGTGGGGATAGGTAGACATGAGCTTGCTGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAGACAGGAGAGTGGGGATAGGTAGACATGAGCTtgatggtatccctgtggcaCAAGGCGAACGAGGTCAAGAAAGGAGAGTGGGGACAGGTAGACATGAGCTTGCTGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAGAAAGGAGAGTGGGGACAGGTAGACATGAGCTTGCTGGTATCCCTGTGGCACAAGGCGAACGAGGTGAAGACAGGAGAGTGGGGATAGGTACGCGTTTACTTGGCGAATTTGAAAGCTTTCGATCATCAAGTATCTTAGCGTTGAGAACCCGCGCAGAGCAGCACATGAGGCAGCTGAATGTCTGCTAGATGACGACGACGCGGGTCAGACGACGACGCGGGTTAGACGACGACTGGGTCAGACGACGACGAGGTCAGAACGACGACGTGGGTCAGACGACGACGTGGGTTAGACGACGACGTGGGTTAATTGCCGAGGCGGTTAAAAGTGATTTCTACTAGATTGCGACGTGTATTAGATAAAGTGTTACTAGATGATGACGTGTTACTAGACGATGACGTGTACTAGATAATGACGTGTACTAGATGATGACGTGTTACTAGATGTCTTCCAGATGACGTGGTGATGATACACCACGCGCTGAATCGATGACTTATTCCTATGGACTGCGTTTACTAGATAGCCTAGATAAAGACTTCCGTTCACAAACTTCTTATATTATTTACGAGATTTTGAATGTTTGTAAGGTTTACTATTTTGCTCatctatttaaaaataatgaatATGAATCTAGAAAAATA

Protein

Uniprot

Uniprot term	Description
O08934	Homeobox protein unc-4 homolog OS=Mus musculus OX=10090 GN=Uncx PE=2 SV=2
A6NJT0	Homeobox protein unc-4 homolog OS=Homo sapiens OX=9606 GN=UNCX PE=1 SV=1
P29506	Homeobox protein unc-4 OS=Caenorhabditis elegans OX=6239 GN=unc-4 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR050649	Family	Paired Homeobox Transcription Factors	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24329	HOMEOBOX PROTEIN ARISTALESS	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09328	UNC4; homeobox protein Unc-4	-	Transcription factors	ko03000	deepkoala